Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi38g00127 | ATGGGGTCTGAAAAAAACGTGGGAAAGTATCGGCTTGGAAGGACAATTGGAGAAGGCACATTCTCTAAGGTTAAGCTGGCTGTGAATGGCAATAATGGTGAGAAGGTTGCAATCAAAGTCATTGATAAGCATATGGTCATGGAAAGCAATCTTAAGAATCAGGCAAAACCCCATCTTTGTCCTCCTTTTTCCTTCACCAACTTGTTATTTACTTTTTTTAACCAATACAAAGGACACCCACACCACATATTTCAGGTCCAAAGAGAGATTAGAACAATGAAGCTTCTGCATCATCCCAATATTGTCAGAATTCACGAGGTTATTGGCACAAAAACTAAGATATACATTGTGATGGAATATGTATCAGGAGGCCATCTATTGGACAAGCTGTCCTATTCCAAGAAGTTGAATGAATGTGAGGCCAGAAAAATCTTCCAGCAACTTATTGATGCTGTGGACTACTGCCACAACAGAGGAGTTTATCATCGAGATCTCAAGCCAGAAAACTTGCTACTTGACAGCAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCACTTAAAAAGCCTAATGATGTCTTAAACACACGGTGTGGATCCCCATGCTATGTGGCACCTGAGCTGCTAATGAGCAAAGGGTATGAAGGAGCAGCTGCTGATGTATGGTCATGTGGGGTGATCCTTTATGAGTTACTTGCGGGTTTTCTACCTTTTGATGACCAGAACTTGATGAGCTTGTATCATAAGATATGCAGAGCAGAATACATATGTCCACCATGGTTTACTCAAAGTCAAAAGAAACTAATTACCAAAATACTTGAACCACGTCCTGCAAAGCGGATAACTATGCCAGATATCATTGAAGATGAGTGGTTTCAAGCAGATTATAGTCCTACTTGTGGTTCTGAATTGGATCAGATTATTAACTTGGATGATGATAGTGTGGCTTTCGATTCAATTGAGGATCACAAAAAGCAGAGAACAAGGCTTGGATCGACACACAATATACTTGAAACCATAGAAAAAATAGAAGCTGCTGCAACAGATGTGAGACTGTCAGTAGAGAAAATGAACAACTTTAAGATAAAAATGCAGCCAAAACAGATAATGAAAAGGTCTTCTAGATCATACTTTGATCTATCAGCCCAGGAAGTTCAATTCTTTATGTTTGGCAACTGTCAGGTGATAGAAGTTTCTCCAACTCATTGTGTTGTAGAAATATCAAAATCTACAGGAGATCTAAGAATGTACAACCAATTTTGTGAAAGTCTATCAAGTCTGCTGAAACAAAAATCTCGTATGTCACCACAAAGTCAAGATTCTGTGGATCAGTGCGACGTTGGCATAAAAATGCAAGAAGCTGAATGCTATGAAGAGCCAAATAATGAAGATAGTGAGAAGGTCTTTGTTGGCTATAAATCTGCTTGA | 1431 | 0.3899 | MGSEKNVGKYRLGRTIGEGTFSKVKLAVNGNNGEKVAIKVIDKHMVMESNLKNQAKPHLCPPFSFTNLLFTFFNQYKGHPHHIFQVQREIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGHLLDKLSYSKKLNECEARKIFQQLIDAVDYCHNRGVYHRDLKPENLLLDSKGNLKVSDFGLSALKKPNDVLNTRCGSPCYVAPELLMSKGYEGAAADVWSCGVILYELLAGFLPFDDQNLMSLYHKICRAEYICPPWFTQSQKKLITKILEPRPAKRITMPDIIEDEWFQADYSPTCGSELDQIINLDDDSVAFDSIEDHKKQRTRLGSTHNILETIEKIEAAATDVRLSVEKMNNFKIKMQPKQIMKRSSRSYFDLSAQEVQFFMFGNCQVIEVSPTHCVVEISKSTGDLRMYNQFCESLSSLLKQKSRMSPQSQDSVDQCDVGIKMQEAECYEEPNNEDSEKVFVGYKSA | 476 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi38g00127 | 476 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 160 | 172 | IPR008271 | GO:0004672|GO:0006468 | |
| Sebi38g00127 | 476 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 59 | - | - | |
| Sebi38g00127 | 476 | SMART | serkin_6 | 10 | 293 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Sebi38g00127 | 476 | Pfam | Protein kinase domain | 85 | 293 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Sebi38g00127 | 476 | Gene3D | Kinase associated domain 1, KA1 | 312 | 432 | - | - | |
| Sebi38g00127 | 476 | ProSiteProfiles | Protein kinase domain profile. | 10 | 293 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Sebi38g00127 | 476 | SUPERFAMILY | Protein kinase-like (PK-like) | 7 | 294 | IPR011009 | - | |
| Sebi38g00127 | 476 | Gene3D | Transferase(Phosphotransferase) domain 1 | 126 | 311 | - | - | |
| Sebi38g00127 | 476 | Gene3D | Phosphorylase Kinase; domain 1 | 72 | 125 | - | - | |
| Sebi38g00127 | 476 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 8 | 424 | - | - | |
| Sebi38g00127 | 476 | ProSitePatterns | Protein kinases ATP-binding region signature. | 16 | 39 | IPR017441 | GO:0005524 | |
| Sebi38g00127 | 476 | FunFam | Non-specific serine/threonine protein kinase | 121 | 300 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi38g00127 | Sebi-Chr38 | 1796839 | 1799552 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi38g00127 | 118 | 429 | CBL-interacting serine-threonine protein kinases | AT5G57630 | 56.805 | 3.45e-124 | 363 |
Transcription factors information