Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00107 ATGGAACCGACACACCTTCATCGTGACTTCATTTTCCGTTCCAAACTCCCTGACATTTACATCCCAACGCACCTCCCACTCCACACTTACTGCTTCCAAAACCTTTCCCAATTCAGAGACCGTCCATGCCTCATCAACGCTAACACCGGCGAGACCTTCACCTATGCTGACGTGGAACTCACCGCCCGCAAAGTCGCCGCCGGACTCAACAACCTAGGCATCCAACAAGGCGACGTCATCCTCCTCCTCCTCCAGAATTGCCCCCAATTCGTCTTCGCATTCCTCGGCGCCTCCTACCGCGGCGCCACCGTCACCACCGCCAACCCGTTCTACACTCCGGCGGAGGTGGCAAAACAAGCCACTGCCTCCAACGCAAAGCTCATCATAACTCAATCCTCATACATTGACAAAGTGAAGGATTTTGCCAGAGACAATGACATCAAAGTGATGTGCATTGACTCGCCGCCGGAAGGTTTTTTACATTTCTCGGAAATAACGGAGGCTGACGAGGCTGACATTCCCGCAGTGAAAATTTCCCCAGACGACGTCGTTGCGCTGCCGTATTCGTCTGGCACAACAGGGCTTCCCAAAGGGGTTATGTTAACCCACAAAGGATTGGTTACTAGCGTGGCGCAACAGGTTGATGGGGAGAATCCGAACCTGTATTTCCACAGCAAGGATGTGTTGCTGTGCGTGCTGCCACTCTTTCACATTTATTCGCTTAACTCTGTTTTGCTCTGTGGTCTTCGAGTTGGCGCTGCCATTCTCATCATGCAGAAATTTGAGATCGTTTCGCTGTTGGAGTCTGTGCAGAAACACAAGGTGAGCATTGCGCCGTTTGTGCCACCCATCGTTTTGGCGATTGCTAACAGCCCTGAGGTGGAACGATACGACTTGTCGTCTATTCGGATGATTATGTCTGGTGCGGCGCCTATGGGAAAGGAACTTGAGGATGCTGTCAGGGCCAAGCTTCCCGACGCTACGTTCGGTCAGGGTTACGGGATGACAGAGGCAGGACCAGTGCTTTCAATGTGCTTAGCGTTTGCAAAGGAGCCAGTGGAGGTGAAATCAGGTGCATGTGGGACAGTTGTAAGAAACGCAGATATGAAGATCGTTGACCCTGAGACGGGCGCTTCGCTTCCAAGGAATCAAGCTGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTATCTAAATGACACGGAGGCGACAAAAAGAACTATAGACAAAGAGGGATGGTTGCATACAGGTGATATTGGTTATATTGATGATAATGATGAGCTTTTCATCGTTGATAGGTTGAAGGAGCTGATCAAATACAAAGGGTTTCAAGTGGCTCCAGCTGAGCTCGAAGCCATGCTGATTGCTCACCCAAACATTTCTGATGCTGCTGTTGTACCCATGAAAGATGAGGCTGCAGGAGAAGTTCCGGTTGCATTTGTTGTACGATCAAACGGTTCTAAAATCTCAGAGGATGAAATCAAGCTATATATATCAAAACAGGTTGTGTTTTACAAGAGAATCAATAAGGTTTTCTTTGTGGGCTCAATTCCGAAGGCACCCTCAGGCAAGATTTTGCGGAAAGACCTCAGGGCAAGGCTTGCGACCGGTCTCGTTATTTAG 1629 0.4954 MEPTHLHRDFIFRSKLPDIYIPTHLPLHTYCFQNLSQFRDRPCLINANTGETFTYADVELTARKVAAGLNNLGIQQGDVILLLLQNCPQFVFAFLGASYRGATVTTANPFYTPAEVAKQATASNAKLIITQSSYIDKVKDFARDNDIKVMCIDSPPEGFLHFSEITEADEADIPAVKISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSKDVLLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFEIVSLLESVQKHKVSIAPFVPPIVLAIANSPEVERYDLSSIRMIMSGAAPMGKELEDAVRAKLPDATFGQGYGMTEAGPVLSMCLAFAKEPVEVKSGACGTVVRNADMKIVDPETGASLPRNQAGEICIRGNQIMKGYLNDTEATKRTIDKEGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKISEDEIKLYISKQVVFYKRINKVFFVGSIPKAPSGKILRKDLRARLATGLVI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00107 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Sebi38g00107 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 534 - -
Sebi38g00107 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 437 - -
Sebi38g00107 542 Gene3D - 437 538 IPR045851 -
Sebi38g00107 542 CDD 4CL 21 532 - -
Sebi38g00107 542 Gene3D - 4 436 IPR042099 -
Sebi38g00107 542 Pfam AMP-binding enzyme 34 442 IPR000873 -
Sebi38g00107 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Sebi38g00107 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Sebi38g00107 542 SUPERFAMILY Acetyl-CoA synthetase-like 7 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00107 Sebi-Chr38 1591193 1597306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00107 7 504 Monolignol Biosynthesis Gene Families AT1G51680 71.203 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00107 K01904 - gmx:100779668 948.732