Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00091 ATGTATTCGAGCCAGTTCGACGGTAACGCAGCCTTCTCCGGCGGCGGATTCATGCCTTCTCAGGCTACTCAAGGCCCTGACACTTCCCCCTTTCCCTCCAAGAATCGTGATGCTCAGTCCTTGCTTCCTCTGACGATCAAGCAGATACACGATGCTGCTCAGTCTAGCGATGATAAAGCCAATTTGATTATTGATGGTGTGGATGTTAACAATGTTACTCTTGTAGGAAGGGTATGTAACAAAGCTGGAAGGATTACTGATGTTACATTTGTACTTGATGATGGTACTGGAAGGATTGAGTGTAATAAATGGCCTGTGACCGACTTCAATGAGGTTGCCACCCATTTCATTGACTGCATATATGTTCATCTCTATAATTCCAGGTTACGGCATCTTCAAGCTAGTGTCCCTATTCAGCAACATGTTGCTAATTCTGCACCAATTACTCCCACAAAAGGTTATCAAGCTCAAGCTGTCCCACCAAATCAATTTTCTGGTCAACATAACAATGGTCAGAAGAGTGTTGAACTTATGATTTTAGATATTTTACATCTCCCCACAAACAGCCTTCAGCTGACGGTTGAAGCGATTCAAGCTCAAAATGCGTTGATCATGGAGAAGCTAGATGCCTTGAATGATCGACGAAAGATGAAAAATAAAGGTGACGATTCGGACGTTGACAAGGAGGAGGAAGGAAGTGTTCATGAGGAAGAAGGACCAAAAGTGGCTCTGTGGACAGGATCTGATTTCCTGCTGGCTATTAAAAATCTTATTCAGGAAGGCGAGATTTATGAAGCTATAGCTGATCACTATAAGTCAATCGTCAATGGTGAGAGAGAAGTAAGGGGTGAGGAGAGAAGTAGCGGAGGAAAAAAGAAAAAAGAAATCAAGCTACCAATTTACAGTTTACACACCGGAAGCAACGCCACACCGGAGGCCACGAACAGCACCGTGGGAGGAGCAGCCAATCTCTCCATCTTCACCGGTGAAGCAAAGTTCGAGGACTTTCTAGGCGGTTCCGTCACAACCACCACCACCACGACTTGTGCACCCACACAGCTTCCGCAGTTCTCCACCGACAACGACCTATACGATTCGGAGCTGAAGACAACCATAGCAGCTTGCTTCCCTCGCGGCTTCGGCGCCGAACCAACCTCCGAGCCTCAAAAGCCCTCTCCCAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGTGGCGTCACCCGACATAGATGGACTGGAAGGTATGAAGCTCATCTATGGGATAACAGTTGTAGAAGGGAAGGACAGAGTCGGAAAGGAAGGCAAGTTTATTTGGGTGGTTATGACAAGGAAGAGAAGGCGGCCAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTCCCTATTTCCAACTATGAGAAGGAACTGGAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGGAGGAAGAGCAGTGGTTTCTCTAGAGGAGCCTCTATTTACAGAGGAGTGACCAGGCACCACCAGCATGGGCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAGGAAGAAGCTGCGGAGGCGTATGACATTGCAGCTATAAAATTCAGAGGACTAAATGCAGTGACAAACTTCGACATGAGTCGCTACGATGTAAAGAGCATTGCAAATAGCTCTCTTCCCATTGGGGGATTATCAAGCAAGAACAAAAATTCCACAGATTCTTCTTGTCTATCAGCTGATAATAGCAAAAGCCATGAGGCAATAAGTCGATCCGATGAACGAGATCCATCTTCAACAACTTCCTTTGCATCACAGCAACAACCTTCAAGCTCTACTACTACCTTAAGCTTTGCCATTCCCATCAAGCAAGACCCTTCCGATTACTGGTCCATCCTCGGCTACCATAATCCTCCTCCTCTTGATCACACCACTGCCGTCAGGAACAACAATAGTAGCACTGTACCCTTCCAAATGGACTTCTCTAATAACAGTGATAACAATAATGCATCGTTTTTCAGTGGAGTAGGAGGAGGAGGCATCTTTGTCCAAAGTGGAAGCAGTGGTTCTTCTACTGCTTCAAGTTCTTCAATCCCATTGGCTACGCCCATATTTGCCTTAAATAGTAGTAATGCTAGTAGTTATGAGAACAGCTGGATAGGAGGTGGTAGCGTGCACACATTCCAAACTCATGCAAAACCGACTCTGTTTCAAACGCCAATATTTGGAATGGAATGA 2298 0.4648 MYSSQFDGNAAFSGGGFMPSQATQGPDTSPFPSKNRDAQSLLPLTIKQIHDAAQSSDDKANLIIDGVDVNNVTLVGRVCNKAGRITDVTFVLDDGTGRIECNKWPVTDFNEVATHFIDCIYVHLYNSRLRHLQASVPIQQHVANSAPITPTKGYQAQAVPPNQFSGQHNNGQKSVELMILDILHLPTNSLQLTVEAIQAQNALIMEKLDALNDRRKMKNKGDDSDVDKEEEGSVHEEEGPKVALWTGSDFLLAIKNLIQEGEIYEAIADHYKSIVNGEREVRGEERSSGGKKKKEIKLPIYSLHTGSNATPEATNSTVGGAANLSIFTGEAKFEDFLGGSVTTTTTTTCAPTQLPQFSTDNDLYDSELKTTIAACFPRGFGAEPTSEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSSKNKNSTDSSCLSADNSKSHEAISRSDERDPSSTTSFASQQQPSSSTTTLSFAIPIKQDPSDYWSILGYHNPPPLDHTTAVRNNNSSTVPFQMDFSNNSDNNNASFFSGVGGGGIFVQSGSSGSSTASSSSIPLATPIFALNSSNASSYENSWIGGGSVHTFQTHAKPTLFQTPIFGME 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00091 765 MobiDBLite consensus disorder prediction 215 239 - -
Sebi38g00091 765 MobiDBLite consensus disorder prediction 379 398 - -
Sebi38g00091 765 MobiDBLite consensus disorder prediction 581 637 - -
Sebi38g00091 765 MobiDBLite consensus disorder prediction 581 605 - -
Sebi38g00091 765 Coils Coil 194 214 - -
Sebi38g00091 765 SMART rav1_2 406 478 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 SMART rav1_2 508 572 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 CDD AP2 405 474 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 SUPERFAMILY DNA-binding domain 507 568 IPR016177 GO:0003677
Sebi38g00091 765 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 351 647 - -
Sebi38g00091 765 ProSiteProfiles AP2/ERF domain profile. 508 566 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 Pfam AP2 domain 508 558 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 Pfam AP2 domain 406 464 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 SUPERFAMILY DNA-binding domain 405 474 IPR016177 GO:0003677
Sebi38g00091 765 MobiDBLite consensus disorder prediction 215 238 - -
Sebi38g00091 765 FunFam AP2-like ethylene-responsive transcription factor 507 568 - -
Sebi38g00091 765 Gene3D AP2/ERF domain 508 568 IPR036955 GO:0003700|GO:0006355
Sebi38g00091 765 Gene3D AP2/ERF domain 406 474 IPR036955 GO:0003700|GO:0006355
Sebi38g00091 765 PRINTS Ethylene responsive element binding protein signature 548 568 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 PRINTS Ethylene responsive element binding protein signature 407 418 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 MobiDBLite consensus disorder prediction 15 34 - -
Sebi38g00091 765 CDD AP2 507 568 IPR001471 GO:0003700|GO:0006355
Sebi38g00091 765 MobiDBLite consensus disorder prediction 615 637 - -
Sebi38g00091 765 SUPERFAMILY Nucleic acid-binding proteins 41 127 IPR012340 -
Sebi38g00091 765 Gene3D - 33 105 IPR012340 -
Sebi38g00091 765 FunFam AP2-like ethylene-responsive transcription factor ANT 405 474 - -
Sebi38g00091 765 ProSiteProfiles AP2/ERF domain profile. 406 472 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00091 Sebi-Chr38 1275882 1302448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00091 362 765 AP2-EREBP Transcription Factor Family AT5G57390 57.078 1.77e-141 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sebi38g00091 AP2 6.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00091 K09285 - gmx:100797828 662.144