Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00089 ATGGCTACGGATTCGTCTTTCGAAGGTGTTGCTCTTGATCCTTCTAAATGCAGTAAACTGAGCATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCCAAGTGGTCTCATGGTGCATCAGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATCTTGTGTGCAGAGATGGGAAAAGAAAGGAAGTATACCGGGCTTACAAAGTTGAAAATTATAGAAAACCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGCCATGAAATCGCCACAGACCCTGAATCAAGTTCTTCTCCTGCAAATGGTCAGAAACCTGCTAAAAGGCAGAGAAAAACTGAGAATCCATCTCGATTACCTGTTCCTGCAAACACTGATTCAGTCAGTAATGGTGGTGATGTGAGTAATACCATTTACTGCAAAAACTCGGCGTGCAAGGCTACCCTAAATCAAGCAGATACATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAGGACCCTAGCCTCTGGTTAATATGTAGCTCTGAAACTCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGTGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTCTCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTGGCAAAGGATACCCGACGTGTAGACATACTTTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGGACTGAAATATATCAAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTGATTGGTTCACCAGTGAAGATTGGTAGAGGGATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAACTCTGTGGTCTTGCTCTGGAGTCACTTGATTCGCTGCTTTCTACAAGAATCTTGTCTCAGTCATCCAATCCAACTATTCAAGATGCACATTTACTGGCTCCAAATATGGTGAGGTTTGAAGATGTTACTACAACATCCCTCACTGTTATTTTGGGTTCTGAAGATCCTTCTGGAGACAATGTTGCTGGTTACACCTTGTGGCATCGCAAAGCTGATGATGTGGACTACCCTGTGGAGCCGACTTGTACATTGCTCCTACCAAATAGAAGGTTGAGTATCAGGAGTCTACTTCCTGCTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTCAAGGGAGTTGTGTACATGTGAAGTTCAAGTCTCAACTGAGCATGGTGAGGATGAAGTCCCCAATTGCTCAGCAACAGAAAGAAGTCAGAGTCCAGTAACCAACTGTAGCAGCCTTTCCAATCCATCATCAGTGGAAGATGAAACTAATAACAGTAACCCATATAGTGACCAGACCGATAATCGAGCTGATAATTATCATTCTTATCACAAGGACAGTGACAAGCTTGCTTCTGGAAATTTATCTAATGATGCAATCAACTGTTCCAATATGGGTGTAGTGGGACTTCCCACTGATGCAGATTCCTTGTCAGACAAGCAGCATGTTGTGGGAATGACTGGCTCTGTACCTAGCTCTGATGTACTAAAGCTTGAAAACAAGCATTCACCAGAGGAACAGGTTACTGAGGACATGAGCACTGATGATGGATTGAATTCCCCAGTTCTAACAGGAAGGGAGCATGTGCATGTGCATGTGCCATTAGTAGGTAGGTCAGAAGGAGGGTTGCCTAATACTCCCTGCAAGTTGGAAATACTTAAAGATGGGCCAGGAAGAAATGGGAGATCTAAATCCAGTGGCAAAGATCAAGAAAATGTATCTGGGAAAAGGGTGGGGCCCCAAGATGGAAGTACTTCCAAAAAAGAAGTGGGGAAAGGCAAGATGAGGGCTGCGCCGCCAATGGTTTTTCAGATCGGGATTTTGAGTATTATGTGA 1983 0.4291 MATDSSFEGVALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHEIATDPESSSSPANGQKPAKRQRKTENPSRLPVPANTDSVSNGGDVSNTIYCKNSACKATLNQADTFCKRCSCCICHQYDDNKDPSLWLICSSETPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEIYQELYKIVDEAVKKLEPEVGPLIGSPVKIGRGIVNRLSSGPEVQKLCGLALESLDSLLSTRILSQSSNPTIQDAHLLAPNMVRFEDVTTTSLTVILGSEDPSGDNVAGYTLWHRKADDVDYPVEPTCTLLLPNRRLSIRSLLPATEYSFKVVSNDSRELCTCEVQVSTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNSNPYSDQTDNRADNYHSYHKDSDKLASGNLSNDAINCSNMGVVGLPTDADSLSDKQHVVGMTGSVPSSDVLKLENKHSPEEQVTEDMSTDDGLNSPVLTGREHVHVHVPLVGRSEGGLPNTPCKLEILKDGPGRNGRSKSSGKDQENVSGKRVGPQDGSTSKKEVGKGKMRAAPPMVFQIGILSIM 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00089 660 SUPERFAMILY Fibronectin type III 346 422 IPR036116 GO:0005515
Sebi38g00089 660 MobiDBLite consensus disorder prediction 604 620 - -
Sebi38g00089 660 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 626 IPR044514 GO:0010048|GO:0040029
Sebi38g00089 660 ProSiteProfiles Fibronectin type-III domain profile. 346 442 IPR003961 GO:0005515
Sebi38g00089 660 CDD FN3 346 420 IPR003961 GO:0005515
Sebi38g00089 660 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Sebi38g00089 660 MobiDBLite consensus disorder prediction 92 107 - -
Sebi38g00089 660 MobiDBLite consensus disorder prediction 88 130 - -
Sebi38g00089 660 MobiDBLite consensus disorder prediction 440 485 - -
Sebi38g00089 660 MobiDBLite consensus disorder prediction 586 647 - -
Sebi38g00089 660 CDD PHD_VIN3_plant 161 226 - -
Sebi38g00089 660 Gene3D Immunoglobulins 327 428 IPR013783 -
Sebi38g00089 660 MobiDBLite consensus disorder prediction 439 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00089 Sebi-Chr38 1233254 1237342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00089 4 486 PHD Gene Family AT4G30200 54.633 2.30e-168 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00089 - - gmx:100794721 1133.63