Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00087 ATGAGGTATATTCGTACCAACAGCTTGAAGAGGCTCTTCTCCTTGAGAAGAAGAAGTTTAGGGGAACAAGTTCTGAGCCCCAACGGTTCTACTGGTGAAGAAAATGATTTGAGCTTGGAGATTCTTCCACATGCAGAAGCAGAACCTTCTCAGAGACCCACATGGAAATGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGTTTCAGCTCAGAAAATATGGTTGGAAAAGGAGGCTATGCAGAGGTTTACAAGGGAACACTGAAAGATGGTGAGGAAATTGCTGTGAAAAGGCTAACAAGAACTTCAAGAGATGAGAGAAAGGAGAAAGAGTTTCTAACAGAGATTGGTACAATTGGTCATGTACGCCATTCCAATGTATTGCCTCTTCTGGGGTGTTGTATTGACAATGGTCTTTACCTTGTTTTTGAGTTATCCACCAGAGGTTCTGTTGCATCTCTTATTCATGATGAAAAATTGCCACCTTTAGATTGGAAAACAAGGCATAAAATAGCTCTTGGGACTGCACATGGCCTTCACTACTTGCATAAAGGCTGCAAGAGGAGGATAATCCACCGAGACATCAAGGCTTCAAACATTCTATTGACAAAAGATTTTGAACCAAAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAATGGACCCATCATTCTATTGCCCCAATAGAAGGAACATTTGGACATTTGGCCCCTGAGTATTATTTGCATGGAGTTGTTGATGAGAAGACAGATGTATTTGCTTTTGGTGTGTTTATGCTAGAAGTCATCTCTGGAAGGAAACCAGTGGATGGGTCTCACCAAAGTTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAACAGCTGGTAGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAAAGACTTGCTTTTGCTGCCTCCTTGTGCATCCGGGCATCTTCAACTTGGCGACCTACCATGAATGAGGTATTGTTTCTTGTCTTAGATTACTTCTCTTAA 1029 0.4159 MRYIRTNSLKRLFSLRRRSLGEQVLSPNGSTGEENDLSLEILPHAEAEPSQRPTWKCFSYEELFDATNGFSSENMVGKGGYAEVYKGTLKDGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTRGSVASLIHDEKLPPLDWKTRHKIALGTAHGLHYLHKGCKRRIIHRDIKASNILLTKDFEPKISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFMLEVISGRKPVDGSHQSLHSWAKPILNKGEIEQLVDPRLEGAYDVTQLKRLAFAASLCIRASSTWRPTMNEVLFLVLDYFS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00087 342 SUPERFAMILY Protein kinase-like (PK-like) 50 335 IPR011009 -
Sebi38g00087 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Sebi38g00087 342 Gene3D Phosphorylase Kinase; domain 1 42 146 - -
Sebi38g00087 342 SMART serkin_6 70 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi38g00087 342 FunFam Putative receptor-like serine/threonine-protein kinase 40 146 - -
Sebi38g00087 342 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Sebi38g00087 342 ProSiteProfiles Protein kinase domain profile. 70 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi38g00087 342 Gene3D Transferase(Phosphotransferase) domain 1 148 339 - -
Sebi38g00087 342 Pfam Protein tyrosine and serine/threonine kinase 73 278 IPR001245 GO:0004672|GO:0006468
Sebi38g00087 342 PANTHER OS08G0249100 PROTEIN 41 336 IPR046958 -
Sebi38g00087 342 FunFam Putative receptor-like serine/threonine-protein kinase 148 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00087 Sebi-Chr38 1203519 1205162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00087 58 333 Trihelix Transcription Factor Family AT1G68690 44.912 2.70e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi38g00087 PK_Tyr_Ser-Thr 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00087 - - gmx:100305398 602.053