Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00084 ATGGAGTGGGACAGCAATTCGGATCTGAGTGGGAACGGGGACGATGATGAAGGCTTCGATTGCTCTCTCCCTTTCCCCTTCTCCATCGACGTCGACAACCTTCTCCAAACGACGCCGTGTGGCTTCGTCGTCTCCGATGCGCTCGAGCCCGACCACCCTATCATTTACGTCAACACTGTCTTCGAGATTGTCACTGGCTACCGTGCCGAGGACGTTCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCGTTTGCTAAGAGAAGGCATCCGATGGTAGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTAAAGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACTCATGTCATTGGTATCCAGTCCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATTACAGAAACTGCTAAATCATCTGGTCAATTTCGTTCTGTGCTTTACTCGTTGCATATTCCAGTGGGGGACCGGAATGTATCTCGTGGAGTTTGTGGGATATTGCAATTGAGTGATGAGGTACTGTCTCTAAAGATATTTGCTCAATTAACTCCAAGAGATATTGCATCAGTTAGCTCTGTCTGTAGGCGATTGTACAAGCTGATAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGCGTTTTAGAGTCTGTGCCTGGTGCGAAGAGACTTGGATGGAGTCGGCTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAGTTGTCTGTTGGAGGTGCTGTTGAACCCTCACGCTGCAATTTCAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAACTCTAGTAATCCTGAGTGGCAACATGTCCAGGTAAGCTCCCCTCCTCCTGGTCGATGGGGCCACACACTTTCTTGTGTTAATGGTTCTAATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAACGATGTGTTTGTTCTGGACCTGGATGCAAAGTCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGATGTGCAGACTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATTTGTCAATGGAGAAGCCTATTTGGAGAGAAATACCAGTGGCGTGGACCCCGCCTTCTCGGCTGGGCCATACATTGTCAGTTTATGGTGGTAGGAAAATATTAATGTTTGGGGGTCTGGCCAAGAGTGGGAGCTTGCGTTTCCGTTCCAGTGATGTATTCACAATGGATTTAAGTGAGGATGAACCTTGCTGGAGATGTGTAACAGGGAGTGGAATGCCTGGTGCTGCAAACCCTGAGGGCATGGCTCCTCCTCCCAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGTCTTCACTCTGCCTCTCAGCTTTACATCCTTGATCCAACTGATGAGAAGCCTACATGGAGAGTCCTAAATGTACCTGGACGCCCTCCGAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGAGAGGAATGGATGCTAAGCGAGCTCGATGAACTTTGTCTGGCAAGTTCTGTAATATAG 1836 0.4766 MEWDSNSDLSGNGDDDEGFDCSLPFPFSIDVDNLLQTTPCGFVVSDALEPDHPIIYVNTVFEIVTGYRAEDVLGRNCRFLQCRGPFAKRRHPMVDSTVVSEIRRCLKEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQSFTEANIDLGPVPGSTITETAKSSGQFRSVLYSLHIPVGDRNVSRGVCGILQLSDEVLSLKIFAQLTPRDIASVSSVCRRLYKLIKNEDLWRMVCQNAWGSETTRVLESVPGAKRLGWSRLARELTTLEAAAWRKLSVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKSPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGSLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAANPEGMAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRVLNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELDELCLASSVI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00084 611 SUPERFAMILY F-box domain 189 260 IPR036047 GO:0005515
Sebi38g00084 611 ProSiteProfiles F-box domain profile. 210 243 IPR001810 GO:0005515
Sebi38g00084 611 FunFam Putative LOV domain-containing protein 477 610 - -
Sebi38g00084 611 Pfam Galactose oxidase, central domain 359 406 - -
Sebi38g00084 611 FunFam Adagio protein 1 29 160 - -
Sebi38g00084 611 SMART fbox_2 202 243 IPR001810 GO:0005515
Sebi38g00084 611 Pfam PAS domain 39 149 IPR000014 -
Sebi38g00084 611 SUPERFAMILY Kelch motif 281 505 IPR015915 GO:0005515
Sebi38g00084 611 FunFam Putative LOV domain-containing protein 272 476 - -
Sebi38g00084 611 Gene3D - 273 475 IPR015915 GO:0005515
Sebi38g00084 611 CDD PAS 38 148 IPR000014 -
Sebi38g00084 611 NCBIfam PAS domain S-box protein 52 148 IPR000014 -
Sebi38g00084 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Sebi38g00084 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 149 IPR035965 -
Sebi38g00084 611 CDD F-box_AtADO-like 198 244 - -
Sebi38g00084 611 Pfam Galactose oxidase, central domain 295 345 - -
Sebi38g00084 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 30 608 - -
Sebi38g00084 611 Gene3D - 476 608 IPR015915 GO:0005515
Sebi38g00084 611 Gene3D PAS domain 25 160 - -
Sebi38g00084 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Sebi38g00084 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Sebi38g00084 611 Gene3D - 195 243 - -
Sebi38g00084 611 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00084 Sebi-Chr38 1161201 1164874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00084 25 149 AGC Kinase Gene Family AT5G58140 41.270 1.74e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00084 K12115 - gmx:100301888 1130.93