Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00056 ATGCGGGATAGTGAGAAGAAGTTAAAGAATGGAAGATCTAAAAAATCCAGTCATTTGAAGGCACGCACAAAGTGCCAAGGGAAGAAGCACAAACTGGAATCAAAATCTCAAACACACAGTGTTGGGAATAATATATCAAGGAAGAGAGTTACTGACTCTTCCCACAAGGGGCCACACAAGGATTCTTCAAATAAGAAATTGATTATTCGACAGAAATTACATAAAACTGGCAGAAAATCTTCACAGAAGCCATCCTCAAAGCTACAAGACAAGAAAGTTTCTCTTAGTTCTAGAACAGAGGGAAAAGATGCTGAGGGAGAGGTGAAACATCAAAAAATAAGGAGAAAGAGAAAGAAGAAGAGGAAAAGGAATAATGTAGACCTTGATGAAGCTTCACGCCTGCAGAGGAGAACAAGGTACCTTTTAATCAAATTGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGCCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCACGAAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCTATTCACCAGTTGGATTCTCTTAGTTCCCTGAGTAGCATTGAAGATTCTGCCTTGGCTCCAGATGGATCTGTTCACCATGAACATATATTCTGTGCAAAGTGCAAGCTGCATGAAGCTCTTCCAGATAATGACATTATACTCTGTTATGTTCCTCCAGGAGAGCAGGGCTGGCTTTGTAAATTTTGTGAGTGTAAGATGAAAATACTGGAGGCAATGAATGCCCATCTTGGAACTCGCTTCTCCTTTAACAGTAATTGGCAGGATGTATTCAAAGAAGAAGCTGCTCTACCTGATGGTGATACTGCATTACTCAATCCTGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATAATCCAGAGAGGAGAGAAGATGGTCACGTTATCAACACAGAAGGAACTGATGATGATCATGCATCTGATGATTTAAGCTGTTCCACTAGTCTGTGTTCTTCCGATGGTGAATGTTCTCTGGTAGATGAAGGTGGCAGTCATGAATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGAAAAAGCTTGTGGCCCAAGACAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGACGAAATGTTTGGGAAGGATGTTCCTGCATGTGAGCAAGTGAGTGAAGATGAAGACTGGGGTCCTAGCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTTGATACTCTTATGACGTTGCATGAAAGTGAGAATAAGCATCCCAATAATGAGCACAACAACATGACAAGAAGGGATTCTTCAGACAAAAATGTCAGAAGGCATTGTTTTAGGATTCCACGCGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAACGAACTTCCTCCAAGATCTATTAAGGAGGGTCTTTCAAAAGAGTTGGGACTTGATACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTCAAAACAAGAAAGCAAGCAGGAGGAGCAGATCAGCTTCCGAGTATTACTTCTAGGAAGAACTCTAATCAGGAGAAAGCTGATCCTTTGAAATCAAAGACCTCAGGAGTTACTTTGCTGGATTCCGCAAAGAATGTTGAAAATGTTACTGGTAGAAAGAAAATAAAGCAACAAAAAATGTTGCCACTCCAGCCAATAGAAAATGGCAATAAGGACTTTAAGGAGGTCAGTGATGATGTGAGCTTGAAGAAGCTGTTGAAAGAGAGAAAGAGGAGGGTAAATTTTACATTTGAAGGAGACTCTGAGGCTGCAGAGTTGGAACTTGAAAGACTAAGCAAATTGGAGATTAAAGTAGATAGTATGAAGCAAAAATTAATTGGAATTCAAAATAAGTGTTCAGATGAACCTCCTTCTAATGAACCATCTATTATATATGTACCCACAGCTGTATTAAGGGAAAAGGTTGACTTATAA 2010 0.399 MRDSEKKLKNGRSKKSSHLKARTKCQGKKHKLESKSQTHSVGNNISRKRVTDSSHKGPHKDSSNKKLIIRQKLHKTGRKSSQKPSSKLQDKKVSLSSRTEGKDAEGEVKHQKIRRKRKKKRKRNNVDLDEASRLQRRTRYLLIKLKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLGIRDAIHQLDSLSSLSSIEDSALAPDGSVHHEHIFCAKCKLHEALPDNDIILCYVPPGEQGWLCKFCECKMKILEAMNAHLGTRFSFNSNWQDVFKEEAALPDGDTALLNPEEEWPSDDSEDDDYNPERREDGHVINTEGTDDDHASDDLSCSTSLCSSDGECSLVDEGGSHEYFSVNSSIDSDESEEKACGPRQRKAVDYKKLYDEMFGKDVPACEQVSEDEDWGPSKRKRREKESDAVDTLMTLHESENKHPNNEHNNMTRRDSSDKNVRRHCFRIPRDAVEKLRQVFAENELPPRSIKEGLSKELGLDTEKVSKWFKNARYLALKTRKQAGGADQLPSITSRKNSNQEKADPLKSKTSGVTLLDSAKNVENVTGRKKIKQQKMLPLQPIENGNKDFKEVSDDVSLKKLLKERKRRVNFTFEGDSEAAELELERLSKLEIKVDSMKQKLIGIQNKCSDEPPSNEPSIIYVPTAVLREKVDL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00056 669 SMART HOX_1 457 519 IPR001356 GO:0003677
Sebi38g00056 669 Gene3D - 457 520 - -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 517 544 - -
Sebi38g00056 669 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 241 667 - -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 49 68 - -
Sebi38g00056 669 FunFam pathogenesis-related homeodomain protein 457 521 - -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 1 130 - -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 313 335 - -
Sebi38g00056 669 Coils Coil 616 643 - -
Sebi38g00056 669 Pfam Homeodomain 466 510 IPR001356 GO:0003677
Sebi38g00056 669 CDD homeodomain 463 518 IPR001356 GO:0003677
Sebi38g00056 669 ProSiteProfiles 'Homeobox' domain profile. 455 515 IPR001356 GO:0003677
Sebi38g00056 669 MobiDBLite consensus disorder prediction 401 456 - -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 522 544 - -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 298 312 - -
Sebi38g00056 669 SUPERFAMILY Homeodomain-like 451 514 IPR009057 -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 93 110 - -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 288 337 - -
Sebi38g00056 669 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00056 Sebi-Chr38 752459 756955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00056 120 517 Homeobox Transcription Factor Family AT4G29940 53.846 2.11e-138 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi38g00056 Homeodomain 3.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00056 - - gmx:100817639 926.006