Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00051 ATGGATAATATTGGTGACGAGTACAAGCATTATTGGGAGACCAACATGTTCTACCAAACACAAGACTTTGACAGCAGCTGGGGATTAGATTTAGATGAGGCGTTCTCCGGCTACTATGATTCGAGTTCCCCTGACGGTGGCGCTTCGTCGGTGGCATCGACTAAGAACATTGCCGCTGAGAGGAATAGAAGGAAGAAGCTGAACGAAAGGCTTTTTGCACTTAGAGCAGTGGTTCCCAATATTAGCAAGATGGATAAGGCTTCTATCATCAAGGATGCTATTGACTACATCCACCACTTGCATGACCAGGAGAAGACAATTCAAGCTCAGATCATCGATCTTCAATCTTCTGCACCACCTGCCACCGATCATCACCACGACCTTCCTATTTTGCTCAGGTCCAACAAGAAGCAGAGAGAACAACAACTTCATAATTCTCTGCTCACTTCAAGAAATTATTCCCCAATTGAAATTATCGAGCTCAGGGTTACATACATGGGTGAGAAAACGTTCGTGGTGAGCTTGACATGCTGCAAGAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTTGAATCTTTGAAGCTCAAGATCATCACAGCCAATATCATTTCTTTTTCAGGAACGCTTTTCAAGACAGTCTTCATCGAGGGTGCGTTAGTGTGGTGGGTCTGGTACCGTTCATGTGGTATTATGGTTTGCAAGAGGTGGTTTGTGCTGGTTGTGGGTGCTTGGTTTCAAGGGTTTGAAGATCTGGGTTTTCTGAGTTCTAGTGGTTTTAGGATTGATAATGATATATATGGGGATTTACCCTTGATTGGAGGAGATGAGAAAATGAGAGTTGTGTTGTTTGGTTTACTGCCAAGAGAGGGAGATAAGCCGTAA 885 0.4395 MDNIGDEYKHYWETNMFYQTQDFDSSWGLDLDEAFSGYYDSSSPDGGASSVASTKNIAAERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYIHHLHDQEKTIQAQIIDLQSSAPPATDHHHDLPILLRSNKKQREQQLHNSLLTSRNYSPIEIIELRVTYMGEKTFVVSLTCCKRTDTMVKLCEVFESLKLKIITANIISFSGTLFKTVFIEGALVWWVWYRSCGIMVCKRWFVLVVGAWFQGFEDLGFLSSSGFRIDNDIYGDLPLIGGDEKMRVVLFGLLPREGDKP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00051 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 116 IPR036638 GO:0046983
Sebi38g00051 294 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 51 217 - -
Sebi38g00051 294 SMART finulus 57 106 IPR011598 GO:0046983
Sebi38g00051 294 Gene3D - 49 117 IPR036638 GO:0046983
Sebi38g00051 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Sebi38g00051 294 Pfam Helix-loop-helix DNA-binding domain 55 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00051 Sebi-Chr38 693129 694670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00051 1 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 56.637 4.74e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi38g00051 HLH 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00051 - - gmx:100817978 287.73