Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00042 ATGAATTTGTCCAATGGTCGTTCTTCTCCTTGCGGCCAGACGCAGCGTGATTTAGAGGCTGGGTCTCCCAGTAGCAGCTCCCCTGATTTTGATGGCGGAGAAGACAATTCCGATCCATTTGATATTACCAGAACAAAGAATGCTTCCATTCAAAGACTCAAGCGTTGGAGGGGTTTCTATGTCTTTCTCTTGAACTCACGTCAAAAGGTCAACTCCAGAAAAGAGGCAAGTGAGGTATCGAGAAGCAAGGTGAAATTCTATCTACAACAAGCTGCGCTTGTGCTTAACGCTTCTCGTCGATTTCGTTACACCTTGGATTTGAAGAAAGAAGAAGAGAGGAAGCAAATATTGAAATTGGTTACAGTGCATGCACGAGTTATTCAAGCAGCATATCGTTTCAAGGAAGCTGAGAAAGTGAATGGATTAGGAACCATAGTACCACCTTCAAGCTCCAGTGGAGAATTTTCAATTGGACAAGAGAAGCTTTCTTCAATCTCAAGGGAGCATGATACTACTGCTCTGCGGGAATATGGAGGGGTTGTAGGGTTGTCACATTTGTTGAAAACCAATTTAGAGAAGGGGATTCAAGGTGATGATGCTGACTTGGTAAAACGAAGGAATACATTTGGTTCCAACAACTACCCTCGAAAGAAAGGAAGAAGTATTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCCGCCATAGCTTCATTAGCACTGGGGATAAAATCTGAGGGCATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAGCATAAAAGAAACATACATTTGGAGGTCATTAGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCCCTAAATATTGGTAACCAGGTCCCTGCCGATGGAATTTTAATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTTGATAAGCATTCTAAGGAACCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGAAGTGGTACTATGCTGGTAACTGCTGTTGGGATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGTATTGCTGGACTCTCTGTGGCTGCCATTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAAAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAGAGTTGGTGATGCTATTGATGGAGCAATTAAAATAGTCACTGTTGCGGTTACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTCCCTTTAGCAGTTACCTTAACTCTTGCCTATTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTGTTCCACCTGACAAAAAGTCACAGCTCTCTCCAATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTACCTGAGAGTGGTAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACAGTGGGGAATTCAGCTTGGGATGGATTTTGAGGCTGCTAGATCAGAATCATCAATTATCCATGTCTTTCCATTTAATTCAGACAAAAAACGAGGCGGAGTTGCAATACAAACGACTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATCGTCCTTGCCTGCTGTACTGGGTATATTGATACAAATGATCAGTTGGTGGAAATGGATGAAGAGAAGATGACAGTTTTTAAAAAAGTTATTGAAGATATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATTATATGAAATGGAGAATGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTCATTTTACTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGCCAAAAAGCTGGGGTTAAGGTCAGAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAGTTCATCTGATGATGCTACAGAGCCAAACATTATTGAAGGAAAAACATTCCGTGCCTTGACAGATGAAGAGAGAGAAGAAATTGTTGAAAGGATATCGGTTATGGGAAGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCAGCACTACATGAGGCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGACATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGTTATAAATGTTGTTGCTGCATTTTCCTCTGGCGATATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCGACTGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGAGAACCTCTTGTAACAAATGTTATGTGGAGGAATCTGCTGATACAGGCAATGTACCAAGTGTCCGTCTTGCTTATACTCAATTTCCGAGGCAGGAGCATACTGAGTCTGAGGCACGAGACCAACGCAGTCAAAGTGAAGAACACTCTGATATTCAATGCATTTGTTCTTTGTCAAGTTTTTAATGAATTTAATGCACGAAAGCCAGACGAGTTCAACATATTCAAGGGGGTTACCAGAAACTACCTCTTCATGGGGATAGTGGGATTAACTATTGTGCTTCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATCTCTGTCATTATAGGATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAACTGATACCAGTACCAGCGACTCCCATGAATAACTTCTTTCGAATATTTCGTTGTGGAAGAACTTAA 3324 0.4191 MNLSNGRSSPCGQTQRDLEAGSPSSSSPDFDGGEDNSDPFDITRTKNASIQRLKRWRGFYVFLLNSRQKVNSRKEASEVSRSKVKFYLQQAALVLNASRRFRYTLDLKKEEERKQILKLVTVHARVIQAAYRFKEAEKVNGLGTIVPPSSSSGEFSIGQEKLSSISREHDTTALREYGGVVGLSHLLKTNLEKGIQGDDADLVKRRNTFGSNNYPRKKGRSILMFIWDACKDLTLIILMVAAIASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVDKHSKEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIAGLSVAAIVLIVLLARYFSGHTKNPDGSVQFIAGKTRVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIVPPDKKSQLSPMLCSLLIEGVAQNTNGSVYVPESGNGVEVSGSPTEKAILQWGIQLGMDFEAARSESSIIHVFPFNSDKKRGGVAIQTTDSEIHIHWKGAAEIVLACCTGYIDTNDQLVEMDEEKMTVFKKVIEDMAADSLRCVAIAYRLYEMENVPTSEEELAHWSLPEDDLILLAIVGLKDPCRPGVKDAVQLCQKAGVKVRMVTGDNVKTAKAIAVECGILSSSDDATEPNIIEGKTFRALTDEEREEIVERISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINVVAAFSSGDIPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRREPLVTNVMWRNLLIQAMYQVSVLLILNFRGRSILSLRHETNAVKVKNTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMGIVGLTIVLQIVIIEFLGKFTKTVKLNWKQWLISVIIGFISWPLAVVGKLIPVPATPMNNFFRIFRCGRT 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00042 1107 Gene3D - 87 136 - -
Sebi38g00042 1107 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 527 725 IPR023299 GO:0000166
Sebi38g00042 1107 FunFam Calcium-transporting ATPase 530 728 - -
Sebi38g00042 1107 Gene3D - 201 396 - -
Sebi38g00042 1107 Pfam Cation transporting ATPase, C-terminus 913 1088 IPR006068 -
Sebi38g00042 1107 Gene3D - 228 1079 - -
Sebi38g00042 1107 Pfam E1-E2 ATPase 298 498 - -
Sebi38g00042 1107 Pfam Ca2+-ATPase N terminal autoinhibitory domain 90 112 IPR024750 GO:0005516
Sebi38g00042 1107 SFLD p-type atpase 502 880 IPR044492 -
Sebi38g00042 1107 Gene3D - 530 728 IPR023299 GO:0000166
Sebi38g00042 1107 Pfam Cation transporter/ATPase, N-terminus 179 245 IPR004014 -
Sebi38g00042 1107 FunFam Calcium-transporting ATPase 275 396 - -
Sebi38g00042 1107 MobiDBLite consensus disorder prediction 1 43 - -
Sebi38g00042 1107 CDD P-type_ATPase_Ca_PMCA-like 204 961 - -
Sebi38g00042 1107 NCBIfam HAD-IC family P-type ATPase 461 549 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi38g00042 1107 NCBIfam HAD-IC family P-type ATPase 265 434 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi38g00042 1107 NCBIfam HAD-IC family P-type ATPase 794 908 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi38g00042 1107 SMART Cation_ATPase_N_a_2 176 250 IPR004014 -
Sebi38g00042 1107 Pfam haloacid dehalogenase-like hydrolase 517 842 - -
Sebi38g00042 1107 PANTHER CATION TRANSPORTING ATPASE 144 1090 - -
Sebi38g00042 1107 FunFam Calcium-transporting ATPase 845 1092 - -
Sebi38g00042 1107 MobiDBLite consensus disorder prediction 1 32 - -
Sebi38g00042 1107 FunFam Calcium-transporting ATPase 228 285 - -
Sebi38g00042 1107 FunFam Calcium-transporting ATPase 721 873 - -
Sebi38g00042 1107 SUPERFAMILY Calcium ATPase, transmembrane domain M 179 1090 IPR023298 -
Sebi38g00042 1107 PRINTS P-type cation-transporting ATPase superfamily signature 721 732 - -
Sebi38g00042 1107 PRINTS P-type cation-transporting ATPase superfamily signature 852 864 - -
Sebi38g00042 1107 PRINTS P-type cation-transporting ATPase superfamily signature 743 753 - -
Sebi38g00042 1107 PRINTS P-type cation-transporting ATPase superfamily signature 520 534 - -
Sebi38g00042 1107 PRINTS P-type cation-transporting ATPase superfamily signature 344 358 - -
Sebi38g00042 1107 PRINTS P-type cation-transporting ATPase superfamily signature 828 847 - -
Sebi38g00042 1107 NCBIfam calcium-translocating P-type ATPase, PMCA-type 168 1090 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sebi38g00042 1107 ProSitePatterns E1-E2 ATPases phosphorylation site. 522 528 IPR018303 -
Sebi38g00042 1107 Gene3D - 517 873 IPR023214 -
Sebi38g00042 1107 SUPERFAMILY HAD-like 518 933 IPR036412 -
Sebi38g00042 1107 PRINTS Sodium/potassium-transporting ATPase signature 900 921 - -
Sebi38g00042 1107 PRINTS Sodium/potassium-transporting ATPase signature 639 657 - -
Sebi38g00042 1107 PRINTS Sodium/potassium-transporting ATPase signature 263 283 - -
Sebi38g00042 1107 PRINTS Sodium/potassium-transporting ATPase signature 513 534 - -
Sebi38g00042 1107 FunFam Calcium-transporting ATPase 9 plasma membrane-type 374 544 - -
Sebi38g00042 1107 SFLD C1.7: P-type atpase like 502 880 - -
Sebi38g00042 1107 SUPERFAMILY Calcium ATPase, transduction domain A 298 393 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00042 Sebi-Chr38 546250 561112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00042 8 1106 Primary Pumps ATPases AT4G29900 69.755 0.0 1554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00042 K01537 - gmx:100790157 1757.65