Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00015 ATGGCCCCTAGAATCCTACTATGCGGCGACGTTTTAGGCCGCCTCAACCAGCTCTTCAAGCGCGTCTCGTCGGTGAACAAATCGGCGGGGCCATTCGACGCGCTCTTGTGCGTGGGTCAGTTCTTCCCGGACTCACCTGAGCTGGTGGATGAATTGATGACATACATCGAAGGTGGCTCACAGATTCCCCTCCCAACCTACTTCATCGGCGACTACGGCGTCGCTGCTCCTAAAGTTTTGTTGGCAGCTTCCAAGGACTCCGCCAACCGTGGTTTCAAAATGGACGGCTTGAAGGTTTGCCACAATTTGTATTGGTTGAAAGGCAGTGGCAAATTCTCCCTCTTGGGGTTATCCGTGGCATATTTATCTGGTAGGAAATCGTCAAATGCTCAACAGTTTGGAACTTATAGCCAAGATGATATTGATGCTTTGCGAGCAATAGCTGAGGAACCTGGAACTGTTGATTTTGGAGTCACAAATAGAGCAGCTACTTCAGACATTCCTGCTGGATTCTCAGATTCTATAGGCAGTGATTCAACCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGTGAACCATATTCCAATGTTGATGCTGTGCACGTCACTCGATTCATAGGGCTTGCATCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCGACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATTTGTGGAGAAAAGAACTTCTCCAAAGGATACCACAAAGAGATCTAATGATGGTATTTCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAACGACATAAACATGAAGCTGGAGATAGTGATAAGGTGTGTTTCAAATTTGTATCTTCCGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATATGGATGCAAGGGAGCAATATATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAAGGTGATAGGCATCCTTCTAGGAGGCCTGGATCTGAAACTAGGTCTAGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCGCATTTAATCATAAGCATTGGGGAAAATTACTATTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAATACCAGTTGAGCATATGCCAAGTACCTTATCCATGTCTTCTGAATCTGAACTTGAGATCTTAAAGTTTCAGAATAGTCTCAAGAGGTACTGCAAGAATCAAGAAAAGGAAGTCATCTTTTTTGAGTGGATTTCCATACGTAGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTAATGGTTGAAAAAGTATTCAATTTAGCTGCACAAAAGTTGGGATTTAAATTTGTGGCAAAGAAATTTGATAACATTTCTGATGGAAGAAAGTTTTTGAAGACACAAATTGATGGGAATTCAAGCTTGTTCTATGCTGAAATCCCAGGAGGCACAATTCTACTGCATCATGTTGAGGAGAAAGAGAGATTTCCTGCCCAATTTGGACGTGAGGTTCTGGCAGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGAATCGTGAACATAGCAAAGATGAAGAGATGAAAATCGTTGAAGATTTCAAGAGCCGATTTGAAGAATATGATCCAAACTGTTGA 1794 0.4242 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPELVDELMTYIEGGSQIPLPTYFIGDYGVAAPKVLLAASKDSANRGFKMDGLKVCHNLYWLKGSGKFSLLGLSVAYLSGRKSSNAQQFGTYSQDDIDALRAIAEEPGTVDFGVTNRAATSDIPAGFSDSIGSDSTISELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTFVEKRTSPKDTTKRSNDGISDSQYWRYDVSQKRHKHEAGDSDKVCFKFVSSGSCPRGEKCNFRHDMDAREQYMRGVCFDFLNKGKCERGPDCNFKHSLQDEGDRHPSRRPGSETRSSRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSMSSESELEILKFQNSLKRYCKNQEKEVIFFEWISIRSTHANLQAIPIPSSKAVMVEKVFNLAAQKLGFKFVAKKFDNISDGRKFLKTQIDGNSSLFYAEIPGGTILLHHVEEKERFPAQFGREVLAGLLNMADNADWRNREHSKDEEMKIVEDFKSRFEEYDPNC 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00015 597 SUPERFAMILY HIT-like 382 455 IPR036265 -
Sebi38g00015 597 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 596 IPR040194 -
Sebi38g00015 597 Pfam Protein similar to CwfJ C-terminus 2 506 594 IPR006767 -
Sebi38g00015 597 Gene3D - 378 499 IPR036265 -
Sebi38g00015 597 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Sebi38g00015 597 SMART c3hfinal6 303 328 IPR000571 GO:0046872
Sebi38g00015 597 SMART c3hfinal6 335 360 IPR000571 GO:0046872
Sebi38g00015 597 SUPERFAMILY CCCH zinc finger 305 331 IPR036855 GO:0046872
Sebi38g00015 597 SUPERFAMILY CCCH zinc finger 335 362 IPR036855 GO:0046872
Sebi38g00015 597 CDD MPP_CWF19_N 6 224 - -
Sebi38g00015 597 Gene3D - 290 362 - -
Sebi38g00015 597 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Sebi38g00015 597 Pfam Protein similar to CwfJ C-terminus 1 377 491 IPR006768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00015 Sebi-Chr38 193276 197392 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi38g00015 CwfJ_C_1 1.3e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00015 K24939 - gmx:100782106 1059.28