Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00008 ATGGGGAGTAAGAGTAGTGTAGCTGAAAGGCTTTTTAACCAATATCAGGGTTTAACATTTGATGTCAATGATGACTGTGTTCCTGGACTAGCTTTCAGGAACCACCTTCCTTACCTGGAGATGCAACAACTGGATCTTCTAAGACTAACATCCACGCAAATACAATCTCAATTTTTTCAAGAAGCAAGGATTAAGAGTGCTATTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGCTTCTCCAATATTATATCTCAAGGTGACATTCAGACAATACTTGGGAATTTATTTCCAGGAGTTCTCTCTTTACATTCCCAATATAATTCAATTGATGATCAGATTAATATTGGACCTTCATCATCTAATTCATCTTCTTACAAATCATTATCTAGCCCTTCCCACTCCCACTTTCCTGAAACTGAAACCCTTCCCACCACACAGAGTAATTATACTATGATCCCTTATTATTACCAACAAACCATCCAAACATTATTATCCCCATCAGCTCAAGTCAATATTCCAAGACAATTCTCACCTGAGAGTGAACATGATGCAATTGTGAGAGCAATCCTCCATGTTATATCTTCAACTTCTCCCCAACAAAATATGCCTAATCCATTAATGTTGCATTCAGAAGCTACTGCTTTCAAGAGATATAGACCTCAAGATAGAAGCACAAACATAACATCTACTTCTAAAATGGGATCCCAAAGGCAAAGCATGGTGAATAGGTCAATTGCACTCTTGAGAGGCTTAAATTCAATGAGAGTGAGAGAACGCATTCAAGCAACCACACGTCCCAATAGTATCCAACTACATCATATGATATCAGAGCGAAGAAGGCGTGAAAAACTCAATGACAATTTTCAGGCACTCAGAGCACTACTTCCTCCGGGAACTAAGAGAGACAAAGCGTCGATCCTTACAACAGCAAAGAAGACAATGAGCTCCTTGATAGCTGAAATTGAAGAGCTTCAATTGAAAAATCACAAGTTGGTGGCACTTTTGTCAGCCAAAGAATTAGAAGAAAACAAAGCAATAAGAAGCTCCTCATCAAATGAAAGGTTGAACGTTGAGGCGGTTTCAAATGTAAATGTAAATGTAGTGGAGGCAGTGAGCTCATCATCAGAAGAGCGAATGGTGGAGTTGCAAGTGAGTGTGAGAGGAGAATTAAGTTCTCATTCTCAAGCTGATATTTTGATTCGCTTATTGGAATTCTTGAAAGGGGTTCAGAATATTGTGAGCTTAATTTCCATGGACGCAAACACACATATTACACAAGGGACACTCATCAATCAATTAACCTTCAGGCTTAGGAGTATTGAGGGAAGTGAATGGGACGAGTCTGCCTTCCGGGAAGCAGTCAGGAGAGTTGTTGCTGACCTGCTCCGTAACTTAAACCAATAG 1410 0.3972 MGSKSSVAERLFNQYQGLTFDVNDDCVPGLAFRNHLPYLEMQQLDLLRLTSTQIQSQFFQEARIKSAIFMGCNKGEIELGFSNIISQGDIQTILGNLFPGVLSLHSQYNSIDDQINIGPSSSNSSSYKSLSSPSHSHFPETETLPTTQSNYTMIPYYYQQTIQTLLSPSAQVNIPRQFSPESEHDAIVRAILHVISSTSPQQNMPNPLMLHSEATAFKRYRPQDRSTNITSTSKMGSQRQSMVNRSIALLRGLNSMRVRERIQATTRPNSIQLHHMISERRRREKLNDNFQALRALLPPGTKRDKASILTTAKKTMSSLIAEIEELQLKNHKLVALLSAKELEENKAIRSSSSNERLNVEAVSNVNVNVVEAVSSSSEERMVELQVSVRGELSSHSQADILIRLLEFLKGVQNIVSLISMDANTHITQGTLINQLTFRLRSIEGSEWDESAFREAVRRVVADLLRNLNQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00008 469 Coils Coil 309 343 - -
Sebi38g00008 469 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 51 462 IPR044658 -
Sebi38g00008 469 Gene3D - 263 335 IPR036638 GO:0046983
Sebi38g00008 469 SMART finulus 276 325 IPR011598 GO:0046983
Sebi38g00008 469 CDD bHLH_AtbHLH_like 275 327 IPR045239 -
Sebi38g00008 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 334 IPR036638 GO:0046983
Sebi38g00008 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Sebi38g00008 469 Pfam Helix-loop-helix DNA-binding domain 274 319 IPR011598 GO:0046983
Sebi38g00008 469 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00008 Sebi-Chr38 97559 101657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00008 7 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.879 2.49e-68 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi38g00008 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00008 - - gmx:100807098 414.075