Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00005 ATGGAAGGGGAAAGAATAAGCTCAGGTCCAAAAAAGCGCGAAGCAAAACCAGAAACTAGATGTGAATGCCTTACAATGTTTTGTGTTCGAAAAGAGTTATTGAGTGGGGGATGGTATGTGAAAATCTTCAATGATGATCACAATCATGACATGCTTGAAAACAAGTATTGTGGGATGATGACAGCTCACCGGAAAATGACCGAGTCTGACACAATGGAAATGAACAGTATGAGAAGTGTTGGGATATCTGTTCCTGATATATATGCCTCTTTTGCTAGTCGGTCTGGAGGCTATGACAAGGTTGGGTTCCGCAAAAAGGATATGTACAATCAAATTGACAAACAACGACGGTTTCAAAGGTCTGATGCAAAAACTGTGCTAAGGTTTGTAAAATCACGGTATAGCCTAACTGAATTTGTTCAACACTTCCAGCGGTCCCTTTGTTACATGAGGTATAAAGAAGAGGAGGATGATTTTGCATCTATGTTGGGTGATGTTGTGTTAACAACAAACTTGCAGTCGTTGGAACGGTCGGCATCAAGGCACTTCACAAGAAAGATCTTCCTATTGTTTCGTAGAGTGTTATTTCGGGCTAGCCAGAATTTTGTTGTCCATTGTAAGCAGTCAACCATGTGGATGATTTACACAGTTAAGAGGTACCAAAGTGGTGGCAAAGAATGGTATGTGTCACTCTATCCACCTTCAAATGATTTCAAATGTTGTTGCCAGCGAATGGAATCGTATGGGTTGTCGTGCCCACACATCATATCTGTGTTGGTTTACCTTGACTATGCAGAGATTCCTCCATGTCTAATACTTCAAAGGTGGACGAAACGTGCTAAAGAATCTATCCGCCACATACTGATTGCAAGCACTCACTATTGGGACTCATCCTTGATTGCTCGATATTCTTCACTGCTAGAGCAATGCAGACAAATGTGTAACCTGGCTGCACGGTGTGATGAAGATTTTAACCGTATTAAAGAGTGGATAAATTCTGAAATCCAAAGGTTGAAAGATAAATATGGGGATAGGATTTTTGAGCAAGATGCAGATTTGGATGGGCTGGATAGTGGTGTGCTTGATCCTGTTCGCGTTAGAACAAAAGGTTGCCCTAGAGCCTCAAGTAGTGTTCCTAGTAAAGGTAGGCGAAAGAACAAGTGTAGCAGGTGTGGCAGATTGGGTCATAATAAAAAATGTTGTCCTCAAACTCGCATGTTACAACCTGCTGCCACCCCTTGTGGGATGGGTGGTCAAGAGGTGGGAAGTCAAAGTACATTTGATCTATATGTGGACTTGCATTGTGGCTCTCCACTGATTGGACAAAGTCAAGTCAACTCTCAGGCCGAGGAAGGATGCAGTAATGGGCGTGGAATTTGA 1380 0.4239 MEGERISSGPKKREAKPETRCECLTMFCVRKELLSGGWYVKIFNDDHNHDMLENKYCGMMTAHRKMTESDTMEMNSMRSVGISVPDIYASFASRSGGYDKVGFRKKDMYNQIDKQRRFQRSDAKTVLRFVKSRYSLTEFVQHFQRSLCYMRYKEEEDDFASMLGDVVLTTNLQSLERSASRHFTRKIFLLFRRVLFRASQNFVVHCKQSTMWMIYTVKRYQSGGKEWYVSLYPPSNDFKCCCQRMESYGLSCPHIISVLVYLDYAEIPPCLILQRWTKRAKESIRHILIASTHYWDSSLIARYSSLLEQCRQMCNLAARCDEDFNRIKEWINSEIQRLKDKYGDRIFEQDADLDGLDSGVLDPVRVRTKGCPRASSSVPSKGRRKNKCSRCGRLGHNKKCCPQTRMLQPAATPCGMGGQEVGSQSTFDLYVDLHCGSPLIGQSQVNSQAEEGCSNGRGI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00005 459 ProSiteProfiles Zinc finger CCHC-type profile. 387 403 IPR001878 GO:0003676|GO:0008270
Sebi38g00005 459 ProSiteProfiles Zinc finger SWIM-type profile. 215 263 IPR007527 GO:0008270
Sebi38g00005 459 PANTHER OS01G0519700 PROTEIN 133 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00005 Sebi-Chr38 77419 79572 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi38g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00005 - - tpra:123913749 227.639