LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi38g00002	ATGGCGGTTGCTCACGGTGGCTGTAGCGGTTGTTGTCCACTCTCATCGTCGACGCCTATTCACGAGGCACTACTGAATAGTAGAACTCGTGCCATGGAAGATGAACAAGTAGCCAGAGTCAAAGCAGAGTTATTGGATGACAGCGCTGGTTCCAACGACGACGTTTTGAGCGAAAGGAAGGACTCCGAAGTGACTGAAGAAGAGGGCGCTGCAGACTTACCTCTTCATATCAAAGAAGAGGTTGCCGACGCTGGCGTTACAGGTCCGTCGATTGAGTTGCCAAAACCAATGGAAGGGTTGCACGAGGTGGGCCCACCACCTTTCCTCAAGAAAACCTTTGAAATGGTGGAGGATCCGGAAACCGACCCGATTGTGTCATGGAGCCCTACTCGTGACAGTTTCATCGTTTGGGATTCTCACGAATTCTCCAAAATCCTTCTCCCTAAATACTTCAAGCACAGCAATTTCTCTAGCTTCATTCGCCAACTCAACACCTATGGCTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGATTCCAAGGAGGGAAGAAGCACTTGCTGAAGAACATAAGGAGGAGAAGTAAGTATAACAAACTGCATCAAGGGACATTCAATTTGATGAAGCCTGGCCTAGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAACATATTGAAAGTGGAAATTCTGAAGCTGAGGCAGCAGCAGGAGAATTCACATATTCAGCTCACAAATGTTCAGGAGCGAATTCGGTGTGCAGAGTTGAAGCAGTATCAGATGATATTTTTCCTCACCAGAATGGCTAGAAGGCCTTCGTTTGTTGAGCAGTTAATCCAAAAGGTTAAGCGAAGAAGAGAGCTTGATGGTGCTGACATGGTTAAGAGGCCTAGATTGCTTGGAACTCAGTGCCCTGTAACATTCCCTAAGAAGGCTCTGGAGACAATTCCTAATGTTGATTATGGTTATAGACACCAAGGTCGTGAACAATTCGCTACATTGCAATCCGAGCTGAATGGACTCATGTCTGAAACTGTGAACACTAGCAAGATGGAACCCCCAGCTCCCTCTCCTTTGGAAAATGAATTATGCAGCTCTGTACAGGGATTAAGGGCCTATGGTTCTAGAGCAAGTGGGCAAGATGTTTCTTCTGCTTATCATGTTATGTCAGAAAAACTACTGGGGGAAAATTCTGGTGTGGATGAAGAACTAGATGTGAACGACTCGAATATCTATCTTGAATTAGAGGATTTGATAAGTAAGCCAGCAGATTGGGTTGGATCTGCAAGTGGATTAGTGGGACAAACTAGTTGA	1323	0.458	MAVAHGGCSGCCPLSSSTPIHEALLNSRTRAMEDEQVARVKAELLDDSAGSNDDVLSERKDSEVTEEEGAADLPLHIKEEVADAGVTGPSIELPKPMEGLHEVGPPPFLKKTFEMVEDPETDPIVSWSPTRDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGTFNLMKPGLEAEVEKLKKDQNILKVEILKLRQQQENSHIQLTNVQERIRCAELKQYQMIFFLTRMARRPSFVEQLIQKVKRRRELDGADMVKRPRLLGTQCPVTFPKKALETIPNVDYGYRHQGREQFATLQSELNGLMSETVNTSKMEPPAPSPLENELCSSVQGLRAYGSRASGQDVSSAYHVMSEKLLGENSGVDEELDVNDSNIYLELEDLISKPADWVGSASGLVGQTS	440

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sebi38g00002	440	SMART	hsfneu3	104	197	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Sebi38g00002	440	MobiDBLite	consensus disorder prediction	43	69	-	-
Sebi38g00002	440	PRINTS	Heat shock factor (HSF) domain signature	159	171	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Sebi38g00002	440	PRINTS	Heat shock factor (HSF) domain signature	146	158	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Sebi38g00002	440	PRINTS	Heat shock factor (HSF) domain signature	108	131	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Sebi38g00002	440	FunFam	Heat shock transcription factor 1	101	198	-	-
Sebi38g00002	440	Pfam	HSF-type DNA-binding	108	197	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Sebi38g00002	440	ProSitePatterns	HSF-type DNA-binding domain signature.	147	171	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Sebi38g00002	440	SUPERFAMILY	"Winged helix" DNA-binding domain	104	197	IPR036390	-
Sebi38g00002	440	Coils	Coil	219	239	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi38g00002	Sebi-Chr38	20700	22111	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi38g00002	94	305	HSF	AT2G26150	54.338	1.26e-80	251

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Sebi38g00002		HSF_DNA-bind	9e-33	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi38g00002	K09419		-	gmx:100818430	622.854

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