Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00002 ATGGCGGTTGCTCACGGTGGCTGTAGCGGTTGTTGTCCACTCTCATCGTCGACGCCTATTCACGAGGCACTACTGAATAGTAGAACTCGTGCCATGGAAGATGAACAAGTAGCCAGAGTCAAAGCAGAGTTATTGGATGACAGCGCTGGTTCCAACGACGACGTTTTGAGCGAAAGGAAGGACTCCGAAGTGACTGAAGAAGAGGGCGCTGCAGACTTACCTCTTCATATCAAAGAAGAGGTTGCCGACGCTGGCGTTACAGGTCCGTCGATTGAGTTGCCAAAACCAATGGAAGGGTTGCACGAGGTGGGCCCACCACCTTTCCTCAAGAAAACCTTTGAAATGGTGGAGGATCCGGAAACCGACCCGATTGTGTCATGGAGCCCTACTCGTGACAGTTTCATCGTTTGGGATTCTCACGAATTCTCCAAAATCCTTCTCCCTAAATACTTCAAGCACAGCAATTTCTCTAGCTTCATTCGCCAACTCAACACCTATGGCTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGATTCCAAGGAGGGAAGAAGCACTTGCTGAAGAACATAAGGAGGAGAAGTAAGTATAACAAACTGCATCAAGGGACATTCAATTTGATGAAGCCTGGCCTAGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAACATATTGAAAGTGGAAATTCTGAAGCTGAGGCAGCAGCAGGAGAATTCACATATTCAGCTCACAAATGTTCAGGAGCGAATTCGGTGTGCAGAGTTGAAGCAGTATCAGATGATATTTTTCCTCACCAGAATGGCTAGAAGGCCTTCGTTTGTTGAGCAGTTAATCCAAAAGGTTAAGCGAAGAAGAGAGCTTGATGGTGCTGACATGGTTAAGAGGCCTAGATTGCTTGGAACTCAGTGCCCTGTAACATTCCCTAAGAAGGCTCTGGAGACAATTCCTAATGTTGATTATGGTTATAGACACCAAGGTCGTGAACAATTCGCTACATTGCAATCCGAGCTGAATGGACTCATGTCTGAAACTGTGAACACTAGCAAGATGGAACCCCCAGCTCCCTCTCCTTTGGAAAATGAATTATGCAGCTCTGTACAGGGATTAAGGGCCTATGGTTCTAGAGCAAGTGGGCAAGATGTTTCTTCTGCTTATCATGTTATGTCAGAAAAACTACTGGGGGAAAATTCTGGTGTGGATGAAGAACTAGATGTGAACGACTCGAATATCTATCTTGAATTAGAGGATTTGATAAGTAAGCCAGCAGATTGGGTTGGATCTGCAAGTGGATTAGTGGGACAAACTAGTTGA 1323 0.458 MAVAHGGCSGCCPLSSSTPIHEALLNSRTRAMEDEQVARVKAELLDDSAGSNDDVLSERKDSEVTEEEGAADLPLHIKEEVADAGVTGPSIELPKPMEGLHEVGPPPFLKKTFEMVEDPETDPIVSWSPTRDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGTFNLMKPGLEAEVEKLKKDQNILKVEILKLRQQQENSHIQLTNVQERIRCAELKQYQMIFFLTRMARRPSFVEQLIQKVKRRRELDGADMVKRPRLLGTQCPVTFPKKALETIPNVDYGYRHQGREQFATLQSELNGLMSETVNTSKMEPPAPSPLENELCSSVQGLRAYGSRASGQDVSSAYHVMSEKLLGENSGVDEELDVNDSNIYLELEDLISKPADWVGSASGLVGQTS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00002 440 SMART hsfneu3 104 197 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi38g00002 440 MobiDBLite consensus disorder prediction 43 69 - -
Sebi38g00002 440 PRINTS Heat shock factor (HSF) domain signature 159 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi38g00002 440 PRINTS Heat shock factor (HSF) domain signature 146 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi38g00002 440 PRINTS Heat shock factor (HSF) domain signature 108 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi38g00002 440 FunFam Heat shock transcription factor 1 101 198 - -
Sebi38g00002 440 Pfam HSF-type DNA-binding 108 197 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi38g00002 440 ProSitePatterns HSF-type DNA-binding domain signature. 147 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi38g00002 440 SUPERFAMILY "Winged helix" DNA-binding domain 104 197 IPR036390 -
Sebi38g00002 440 Coils Coil 219 239 - -
Sebi38g00002 440 Gene3D - 101 198 IPR036388 -
Sebi38g00002 440 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 94 327 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00002 Sebi-Chr38 20700 22111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00002 94 305 HSF AT2G26150 54.338 1.26e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi38g00002 HSF_DNA-bind 9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00002 K09419 - gmx:100818430 622.854