Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi388g00036 ATGTTTCATCATCAGCTCCCATCTTCTTCTCCTATGCCAATTCCAACCCCAATGGACAGATCAAGTTCTTCAAGGTGGAAGCCCAGCATTGAGGTAGCACCAAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCCTGTCACAGCCTAGATACTTCTGCAAAGGCTGCAGGCGCTACTGGACCAAAGGTGGCTCCCTTCGGAACGTCCCTGTTGGTGGTGGCTGCCGCAAAAGCCGCCGCGGAAAATCCGCAAAGCACCCCAAAACTGAAGGTAGCTTCCATGGGAGTGATGATAGAGAGTCATCAATAGGTGATCAACACAACCAAACCAATGGCCATGTGTCTTGTGATATAGACATGGCTCTTGTGTTTGCCAAATTCTTGAACCAAGAGAAGAGTAATATTGGTGAGGAACAATTTGAGAGTGAGGCTACTAACAATGGGTCAACTTCTTCCAATGATGCAGTGATCCAGCCTCAGAAGAAGTCCTCTGATGAAGCAGTGGGGGACACACTGGAAGAATTGAGTTTGAGTGGGATTGATGAGCTGGAGGGATATTTTGGGGCAGGTGGTTGTGATGATGAAGATGTGGTCCAAGATGTTCTCTGGCCTCATGATGCTACCATGTCTTCTTCTGTTATGTGGCAAACACCATCCATGATGCAAACGCAGTTGGAGGACTTGGAGTTGGAGTTGGAGTACTCGTTGCCATTCAATGAGGATGGTCAATTATTACCGATTAGTTCAACTTCTTCTACCGTGAATTTAATAAGCGACAGTTGGAGTTCCTTTGATTTTTCAACCATGGAAGTCTTCTCATCAAGACCCTAA 855 0.4643 MFHHQLPSSSPMPIPTPMDRSSSSRWKPSIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRGKSAKHPKTEGSFHGSDDRESSIGDQHNQTNGHVSCDIDMALVFAKFLNQEKSNIGEEQFESEATNNGSTSSNDAVIQPQKKSSDEAVGDTLEELSLSGIDELEGYFGAGGCDDEDVVQDVLWPHDATMSSSVMWQTPSMMQTQLEDLELELEYSLPFNEDGQLLPISSTSSTVNLISDSWSSFDFSTMEVFSSRP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi388g00036 284 MobiDBLite consensus disorder prediction 146 176 - -
Sebi388g00036 284 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 166 IPR045174 GO:0003700|GO:0006355
Sebi388g00036 284 MobiDBLite consensus disorder prediction 78 118 - -
Sebi388g00036 284 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Sebi388g00036 284 Pfam Dof domain, zinc finger 34 88 IPR003851 GO:0003677|GO:0006355
Sebi388g00036 284 MobiDBLite consensus disorder prediction 1 27 - -
Sebi388g00036 284 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Sebi388g00036 284 MobiDBLite consensus disorder prediction 93 112 - -
Sebi388g00036 284 MobiDBLite consensus disorder prediction 146 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi388g00036 Sebi-Chr388 567145 567999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi388g00036 21 137 C2C2-Dof Transcription Factor Family AT3G52440 59.504 2.30e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi388g00036 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi388g00036 - - mtr:11416134 270.781