Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi388g00022 ATGATGGAACAGAACCAGAGTAAGAGTATCCTATGCAAATACACTGTGCATCACAGCGTTACCAAGAAGCTGGTTTCACCCAAGAAACAGAGCAATCCCATAGAGCCCAGAGTGGTTCGGATATCACTCACTGACCCTGACGCCACCGACTCCTCCAGCGACGAAGAAGGAGAGCGCTTCGTTCGCCGCAGAACGAAGCGCTATGTCAACCAGATTGAAATCGAAACGACAACCAAAAACGTCGCCGTTCAGAACCCGAGAAAGAGGCCCGCCGGAGAAACCGCTTCAATCCGGCGGCCGGCGAAGGTTTCTGCCGCCTCCAACAATGGAAGAAAGTTCCGCGGCGTTAGGCAGAGACCTTGGGGGAAATGGGCGGCGGAGATTCGAGATCCTGCAAGGAGGGTGAGGCTCTGGTTAGGTACCTACGACACTGCAGAAGAAGCAGCTATGAAGGAAACACCGCCGCCGGAGGCCGTGAAACCAGAAATGAAGGTCGTCGTGGAGGAAGAAGCCTCCGGTTCCGGTTACGATTCCGGCGATGATCAGTGTCTGAACCTTTCATCTCCCACTTCGGTGCTCCAATTCCGAAGCAACTCGAGCGAGTCACAAAAACCGGTCGAACCGGAGGAAGCGTACGAACCGGAGGTAGTGTCAGAGGTTTTCAGAGAGTGCCAAGGAGAGACGAGTTTGTTCGATGAGAGTGGGCAGTTTTTCCAGCTGGATAATATGGATATGGACATGGCTGTTTGGGATGATGTGTTCAATTTCCAAACCCCAGAGTACCCTATGCTTTTTGAAGAAGAACGACCACAAATGTTCGACGAAACGACGCCGTTTTCCTCAGAGGAAGATTTCATTGACAGCATTGTCCTTGCTGATTCTCTCATCGATTTTGATAAAGCCTGTCCTTCTCCCTCCTCCTCTTCTAATTCCTTGTGCCAAGTGGACGATTACTTTCAAGATATATTGTTAGGCTCAGATCCTCTCGTGGTTCTCTGA 999 0.5115 MMEQNQSKSILCKYTVHHSVTKKLVSPKKQSNPIEPRVVRISLTDPDATDSSSDEEGERFVRRRTKRYVNQIEIETTTKNVAVQNPRKRPAGETASIRRPAKVSAASNNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMKETPPPEAVKPEMKVVVEEEASGSGYDSGDDQCLNLSSPTSVLQFRSNSSESQKPVEPEEAYEPEVVSEVFRECQGETSLFDESGQFFQLDNMDMDMAVWDDVFNFQTPEYPMLFEEERPQMFDETTPFSSEEDFIDSIVLADSLIDFDKACPSPSSSSNSLCQVDDYFQDILLGSDPLVVL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi388g00022 332 CDD AP2 112 150 IPR001471 GO:0003700|GO:0006355
Sebi388g00022 332 MobiDBLite consensus disorder prediction 87 108 - -
Sebi388g00022 332 MobiDBLite consensus disorder prediction 23 60 - -
Sebi388g00022 332 MobiDBLite consensus disorder prediction 194 213 - -
Sebi388g00022 332 Gene3D AP2/ERF domain 111 151 IPR036955 GO:0003700|GO:0006355
Sebi388g00022 332 SUPERFAMILY DNA-binding domain 112 150 IPR016177 GO:0003677
Sebi388g00022 332 SMART rav1_2 112 157 IPR001471 GO:0003700|GO:0006355
Sebi388g00022 332 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Sebi388g00022 332 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Sebi388g00022 332 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 150 - -
Sebi388g00022 332 Pfam AP2 domain 112 150 IPR001471 GO:0003700|GO:0006355
Sebi388g00022 332 ProSiteProfiles AP2/ERF domain profile. 112 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi388g00022 Sebi-Chr388 293777 294845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi388g00022 12 294 AP2-EREBP Transcription Factor Family AT4G27950 38.095 4.51e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi388g00022 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi388g00022 - - gmx:100807598 353.214