Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi388g00017 ATGGATGACAGTTTATCTGATATTTTTGAAGAGGGAGAATTCGGGAACAACCAATTTGGTGGAGACGACCTCTATGCCATTTTGGAAAGCCTACAAGACTTCACTGATTTTCCTCTCACTAACCAACTATCTGTTACGAACAACCACGACACCTCCAGAAAGTCAGCCTCTTCAAGTGCTCCACAACCACAAGATTCTGAAAATTATGAGCTTGGAATCTCACCCAAAACCAAAAGACAGAAGCTTACCCCAACTTCCTCAGAGGAGCCAAACCAAGATGGACAACAAAGGATTTCTCACATCACCGTTGAGAGAAACAGAAGAAAGCAAATGAATGAACACTTGACCGTCTTGAGGTCACTCATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAGTGAGTTGCAGCTACTGCTTCAAGCCCTGGAAGCCAAGAAACAAAGAAAAGTGTACAGTGAAGTACTGAGCCCGAGGGTAGTTTCAAGCCCAAGGCCTTCACCACTTAGTCCTCGAAAACCACCACTGAGCCCTAGACTAAACTTGCCCATTAGCCCAAGGACTCCACAGCCAGGTAGCCCTTACAAGCCCAGGTACATTTCACCTCTTGAGCCATCTCCCACTTCTTCCGCATCCTCCTCTATCAACGATAATATCAATGAGCTTGTTGCCAATTCCAAGTCTCCTATTGCCGACGTGGAGGTCAAGTTTTCAGGCCCGCACGTGCTTTTGAAAACCGTTTCTCAACGGATTCCTGGACAAGCTCTCAAGATCATAACCGCACTTGAAGATCTCGCGCTTGAGATCCTCCATGTCAACATTAGCAGTACCGCGGATGATACCATGCTAAACTCATTCACTATCAAGTTCTTTATTGCGATATAG 915 0.4536 MDDSLSDIFEEGEFGNNQFGGDDLYAILESLQDFTDFPLTNQLSVTNNHDTSRKSASSSAPQPQDSENYELGISPKTKRQKLTPTSSEEPNQDGQQRISHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQLLLQALEAKKQRKVYSEVLSPRVVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYKPRYISPLEPSPTSSASSSINDNINELVANSKSPIADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNISSTADDTMLNSFTIKFFIAI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi388g00017 304 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
Sebi388g00017 304 SMART finulus 101 152 IPR011598 GO:0046983
Sebi388g00017 304 MobiDBLite consensus disorder prediction 45 98 - -
Sebi388g00017 304 FunFam Transcription factor SPEECHLESS 87 161 - -
Sebi388g00017 304 MobiDBLite consensus disorder prediction 174 211 - -
Sebi388g00017 304 PANTHER TRANSCRIPTION FACTOR FAMA 4 300 IPR044283 GO:0003700|GO:0010052
Sebi388g00017 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Sebi388g00017 304 MobiDBLite consensus disorder prediction 164 224 - -
Sebi388g00017 304 Gene3D - 86 161 IPR036638 GO:0046983
Sebi388g00017 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 171 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi388g00017 Sebi-Chr388 232456 238472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi388g00017 1 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.412 9.23e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi388g00017 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi388g00017 K20558 - gmx:100777437 387.882