Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi387g00027 ATGGCTGCATTTTGTTCATCCAACAGAAAAGATGTGATTGGACTTGCCCAAACAGGTTCCGGTAAGACTGGTGCTTTTGCTCTTCCCATATTGCATTCCCTTTTAGAAGCACCACGCCCAAAAGATTTCTTTGCTTGTGTATTGTCTCCCACAAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCGGAAATTGGTGTAAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAGCAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTTGGGACGCCTGGACGAGTTTTAGATCACCTAAAACACACCAAAGGATTTTCTCTTAGTAGATTAAAATACTTTGTCTTAGATGAGGCAGACAGGCTGCTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAGTGATTCCTCGTGAACGGAGAACATTTCTATTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTTCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCATCAAAATATTCCACTGTTGACACACTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACAAAAGGATTGCTACCTTGTATACATTCTTACTGAAATGGCTGGAAGTACATCAATGGTATTCACTCGGACATGTGATGCAACTCGGCTTCTGGCCTTGATGCTTAGGAATCTTGGCCTTAAAGCCATCCCAATTAATGGTCATATGAGCCAGCCAAAGAGACTCGGAGCTTTGAATAAGTTCAAGTCTGGAGAATGCAATATTCTCCTTTGTACTGACGTAGCTAGTAGAGGACTGGATATTCCAACGGTAGATGTGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGTGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTGGAGTGGCAAGAAGCTGCCAGAGTATCCTGCACAAGAAGAGGAAGTTTGCTTTTGGAGGAGCGTGTTAGCGAGGCCAAAAGATTAGCAGTAATGAAAATGAAGGAGACGGGAGGGAAGAAGAAACGGAGGGGCGAAGGAGATGACGGTGAGGAAGATATTGACAAGTACTTAGGTCTTAAGGATGGAAAATCATCCAAGAAGTTTAGAAGAAGATGA 1182 0.4306 MAAFCSSNRKDVIGLAQTGSGKTGAFALPILHSLLEAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKHTKGFSLSRLKYFVLDEADRLLNEDFEESLNEILQVIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKQKDCYLVYILTEMAGSTSMVFTRTCDATRLLALMLRNLGLKAIPINGHMSQPKRLGALNKFKSGECNILLCTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWQEAARVSCTRRGSLLLEERVSEAKRLAVMKMKETGGKKKRRGEGDDGEEDIDKYLGLKDGKSSKKFRRR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi387g00027 393 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 122 130 IPR000629 -
Sebi387g00027 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 326 IPR027417 -
Sebi387g00027 393 PANTHER RNA HELICASE 5 349 - -
Sebi387g00027 393 Pfam Helicase conserved C-terminal domain 202 308 IPR001650 -
Sebi387g00027 393 MobiDBLite consensus disorder prediction 355 378 - -
Sebi387g00027 393 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 203 356 IPR001650 -
Sebi387g00027 393 SMART ultradead3 1 191 IPR014001 -
Sebi387g00027 393 Pfam DEAD/DEAH box helicase 8 165 IPR011545 GO:0003676|GO:0005524
Sebi387g00027 393 CDD SF2_C_DEAD 188 317 - -
Sebi387g00027 393 Gene3D - 2 181 IPR027417 -
Sebi387g00027 393 SMART helicmild6 227 308 IPR001650 -
Sebi387g00027 393 Gene3D - 182 335 IPR027417 -
Sebi387g00027 393 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 3 176 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi387g00027 Sebi-Chr387 869130 882844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi387g00027 1 355 Eukaryotic Initiation Factors Gene Family AT3G13920 33.795 2.98e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi387g00027 K14777 - gmx:100775796 650.203