Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi387g00024 ATGGCACCATGTGCAGCATGCAAGCTTCTTAGAAGGAGATGTGCACAGGATTGTGTGTTTGCACCTTATTTCCCTGCAGATGAACCTCACAAGTTTGGCAGTGTTCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTACAGGAATTACCAGAACACCAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCCAATGCAAGAGTGAGGGACCCTGTTTATGGATGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGTGCTTCAAACTCAATTGGCATTGGCACAAGCAGAAGTTGTGCACATGAGAATGAGCCAATTCTCATCCTCCTCAGATCCTCAACCATCATCAATGCCTCCTCCTATAGCCTCTGAGAACTTATACCAATCAAATAGGCTCCTTTCTTCTCAGACCAAGTCCCTTTTTGGCACAGACACTGACACCAACATGGGGCAATCCTTGTGA 477 0.4507 MAPCAACKLLRRRCAQDCVFAPYFPADEPHKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMSQFSSSSDPQPSSMPPPIASENLYQSNRLLSSQTKSLFGTDTDTNMGQSL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi387g00024 158 Coils Coil 82 102 - -
Sebi387g00024 158 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Sebi387g00024 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 128 - -
Sebi387g00024 158 MobiDBLite consensus disorder prediction 109 134 - -
Sebi387g00024 158 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi387g00024 Sebi-Chr387 840406 844064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi387g00024 2 110 AS2 family AT1G31320 88.073 1.52e-62 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi387g00024 LOB 3.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi387g00024 - - gmx:100803188 229.18