Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi387g00008 ATGGCTTCCACTAATGGCTACAAAGCAAGTGACCTGCTCCAAGGTCAAGCTCACTTGTACAGAGTCATGTATAGCTTCTTGAATCCCATGTGCATCAAGTGGGCTATTGACCTTGGCATACCAGATATAATCCACAACCATGGCCAAGCCATTACTCTTTCTGAGCTGGTTTCAGCTCTTCAGGTTCCACAAGCAAAAGCTACTTGCATCCAGCGCCTAATGCGCTTATTGGCACACAATGACATTTTTATAATCCTTAAAATGGATGACAACATAGAAGGGAAAGAAGCATATGCTCTTACTCCAACATCACAACTCCTTGTCAAAGGGACTGATCATTGCTTATCTTCAATGGTTCAGTTGTTAAATGACCCAACTCTGGTTGGTTTATACCATCAATTGGGGAAGTGGACTTTTGGGGAGGAGCTCACAATTGTTGAGACTGCATTAGGCCTAGGAAGCTATTGGGATTTTATTAATCAAAATCCCACTCACTTGAAGATTTTCAATGAGGCTATGGAAAGTGATTCTCACTTGATAAGGTTGGCACTGAGGGATTGTAGATCAGTTTTTGAGGGACTGGATTCCTTGGTTGATGTTGGTGGTGGAACTGGAAATACAGGCTTAACAGGAAGCAACAATTTGAGTTTTGTTGGTGGGAACATATTTAAGTCTATCCCTCATGCTGATGCAATTTTACTCAAGTTGCTGTTACACAATTGGAGCGACGATGATTGTATAAAGATACTAAAAAATTGCAAAGAAGCTATTTCAGGAAAAGGCAAAGGAGGAAAACTGATCATCATAGATATAGTGATAAATGAAAAGCAAGATGAGCATGAAATGACAGAACTAAAGCTTTTGCTTGATGTAGTTATGATGACCAGTGTCAATGGAAAAGAGAGAGATGAAAAAGACTGGAAGAGACTTTTGATGAAAGCGGGCTTTGAGCACTACAAAATATTTTGCACATCTGGGGCATGGTCTCTTATTGAGCTTTATCCTTAA 1008 0.4008 MASTNGYKASDLLQGQAHLYRVMYSFLNPMCIKWAIDLGIPDIIHNHGQAITLSELVSALQVPQAKATCIQRLMRLLAHNDIFIILKMDDNIEGKEAYALTPTSQLLVKGTDHCLSSMVQLLNDPTLVGLYHQLGKWTFGEELTIVETALGLGSYWDFINQNPTHLKIFNEAMESDSHLIRLALRDCRSVFEGLDSLVDVGGGTGNTGLTGSNNLSFVGGNIFKSIPHADAILLKLLLHNWSDDDCIKILKNCKEAISGKGKGGKLIIIDIVINEKQDEHEMTELKLLLDVVMMTSVNGKERDEKDWKRLLMKAGFEHYKIFCTSGAWSLIELYP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi387g00008 335 Gene3D - 1 107 IPR036388 -
Sebi387g00008 335 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Sebi387g00008 335 Gene3D Vaccinia Virus protein VP39 209 335 IPR029063 -
Sebi387g00008 335 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Sebi387g00008 335 PANTHER O-METHYLTRANSFERASE 13 320 IPR016461 GO:0008168
Sebi387g00008 335 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 333 IPR029063 -
Sebi387g00008 335 PIRSF O-mtase 1 210 IPR016461 GO:0008168
Sebi387g00008 335 PIRSF O-mtase 207 335 IPR016461 GO:0008168
Sebi387g00008 335 Pfam O-methyltransferase domain 213 317 IPR001077 GO:0008171
Sebi387g00008 335 Pfam O-methyltransferase domain 144 206 IPR001077 GO:0008171
Sebi387g00008 335 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 335 IPR016461 GO:0008168
Sebi387g00008 335 Gene3D Vaccinia Virus protein VP39 108 208 IPR029063 -
Sebi387g00008 335 FunFam Coniferyl alcohol 9-O-methyltransferase 2 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi387g00008 Sebi-Chr387 298152 299409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi387g00008 29 333 Monolignol Biosynthesis Gene Families AT5G54160 29.518 2.92e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi387g00008 K22588 - gmx:100813225 367.466