Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi386g00005 ATGGTAAGAGCCCCTTGTTGTGACAAAAATGGACTGAGAAAAGGCGCGTGGACACCCGAGGAAGACAGCAAGTTGATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCTACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGTAGACTGAGGTGGCTCAATTATCTAAGGCCCGGCGTCAAAAGAGGGAACTTTAGTCAAGAAGAAGAAGAGATTATCATCAGACTTCACGGAAAGCTGGGTAATAAATGGTCTTCGATTGCTACTCATTTGCCAGGGAGAACGGATAATGAGATAAAGAATCACTGGCACACCTCTCTGAAGAAGCGTTTTGAGCAGAACAAGTCAGACACTAGAGTTGGAACTGAAAAGGCCAAAGACTCAATGTCAAACAAGAATGGCTCATCAATGGAAGAAACCAATAAGCAACTTGAGAGTGTGTCGACAGAGAACAGCAGTGGTGGTCCTGATACTTGTCCGTTTTCTCCTCAACCATCGTCTAGTGGATTCTCCTGTGTAACAACAGACACTACTCTGGCAGCTACCACAAACAATGAAAAATTTGTTCTAGAAGAGGATGACTTTTCTTTTCTGGATGTTTACACGGAGGCCGTTAGTGAAAATTTCTGGACAGAACCATTTCTGACTGACAGTTCCTATTATCCTCAAACTGAACCCGTTGGGTGTGAAATTGAATACTTTAGTCCCGTGTACGATGTAGAGCTTTGGAGCCATAATAATAATAATTTGTACGAGGAATATGGGGGTTTATTCTATTAA 795 0.434 MVRAPCCDKNGLRKGAWTPEEDSKLIAYVTRYGCWNWRLLPKFAGLARCGKSCRLRWLNYLRPGVKRGNFSQEEEEIIIRLHGKLGNKWSSIATHLPGRTDNEIKNHWHTSLKKRFEQNKSDTRVGTEKAKDSMSNKNGSSMEETNKQLESVSTENSSGGPDTCPFSPQPSSSGFSCVTTDTTLAATTNNEKFVLEEDDFSFLDVYTEAVSENFWTEPFLTDSSYYPQTEPVGCEIEYFSPVYDVELWSHNNNNLYEEYGGLFY 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi386g00005 264 CDD SANT 69 112 IPR001005 -
Sebi386g00005 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi386g00005 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sebi386g00005 264 MobiDBLite consensus disorder prediction 116 131 - -
Sebi386g00005 264 CDD SANT 16 61 IPR001005 -
Sebi386g00005 264 Gene3D - 14 66 - -
Sebi386g00005 264 MobiDBLite consensus disorder prediction 116 171 - -
Sebi386g00005 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi386g00005 264 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Sebi386g00005 264 Gene3D - 68 143 - -
Sebi386g00005 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sebi386g00005 264 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi386g00005 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi386g00005 264 SMART sant 66 114 IPR001005 -
Sebi386g00005 264 SMART sant 13 63 IPR001005 -
Sebi386g00005 264 FunFam MYB-related transcription factor 13 66 - -
Sebi386g00005 264 MobiDBLite consensus disorder prediction 132 171 - -
Sebi386g00005 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi386g00005 Sebi-Chr386 129182 130960 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi386g00005 1 224 MYB Transcription Factor Family AT2G31180 44.196 1.28e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi386g00005 Myb_DNA-binding 2.2e-13 CL0123