Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi385g00011 ATGGAGGAGAGGAATTATGTGTGCAGGTATTGCTACAAGAGGTTTCCTTGTGGGAAGTCTCTGGGTGGTCACATCAGGACCCATATGAGTGAAGAAAGAAGTAATATTGATAGTGACATGCTCAAGTTGGATGGTGGTAGAAGGAAGAAGAGAGATTTATGGTCTGAAGCTGATGCTGGTGCTGGTGGGAACTCCATTTATGGCCTTAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCCGATGCCACTTTGGAACAGGTGGAGAATTTCTGCAAAGAATGTGGGAAAGGCTTTCCTTCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAGAAAGAGAAGAGAACCAAATTAGAGTCTGAATCTGAAGAAGACAGTGGTGGTGATGAGAAGGAGAAATTGGTTATGGATAGTCAATCTGATACTGAGACTTGTGCTCCAACACATCCAAGGAGATCCAAGAGAATGAGGTTCAAGTCTCTTACCCTTTCTAATCACTCCTCTTCTGTTGTTCTTCCTTTGGGGAATGGTTCTTCACCTGTGTCTGAGGTTGAGCAGGAACAAGAAGAGGTGGCTAGGTGCTTGATGCTGTTATCCAAAGATTCTAGTTTCAAGGGTCGTTTTGCTTCTGAATCCTCTGATAACAACTCGGTTGTTCTTGAGGCAAAATCATCCTCTCTTGATACAAAGGTTGCTATGAGTTATGGTAACAACTTTGTCTCTAATGGTTTTGAATTTGCTGAGAAGAAGCTGCTGCTCAAGGGCACCAAGTTAAAGTCTGTTGTTGGGGTTGGTGTTTCTGAGAATTCAGATTCTAGATGTTTCAGATATGGTCCCAAAACCAAAAGGGTAGACTCAGATGTTTCACATGATGAGTTTAAGAGGCCAAAGATTGGAGATAAGTCAGGTTTTGAGGATTGCAGTTTTGAGTTGAACAGAGGAAGAAGCAAATGCAGTGTTACTTTATTGAAGAAATTAGTCATTAAGGATTTTGATTGTGATAGAACAGATGGAAAGAGAGCCAACTATGATTCTCTTAGTCACAAATTTGTTGGCATTTCTAGCAAGAAGAGAACTAATGGTTCTACCAATGATGAAATCTATGAGAATGGTAGGAAAGGTTGGAAGTATGAGAAGGACAATGACTCTTATGATTCAACATATGAGAGTGATGAAAACAGTTCAGAGAGTGATTCATATCCTGCTCCCAGGTATCTTAATAGTAAGAGTCTCAATGGGAAAAAGTCCAGCAAGACCAAGAAGAAGAAGTTGAAGTCAAAGAAAAGCAGGGAACATGAGTGCCCAATCTGCTACAAAATTTTCAAGTCAGGCCAAGCCTTAGGTGGTCATAAAAGATCCCACTTTATTGGAGGTTCTGAAGAAAACACTCTTGTGATCAAACAAAGTGCTCCTGTTGTTCCTTGCCTTATTGATCTCAATTTACCTGCTCCTGTTGATGATTAA 1476 0.4092 MEERNYVCRYCYKRFPCGKSLGGHIRTHMSEERSNIDSDMLKLDGGRRKKRDLWSEADAGAGGNSIYGLRENPKKTMRFVHSDATLEQVENFCKECGKGFPSLKALCGHMACHSEKEKRTKLESESEEDSGGDEKEKLVMDSQSDTETCAPTHPRRSKRMRFKSLTLSNHSSSVVLPLGNGSSPVSEVEQEQEEVARCLMLLSKDSSFKGRFASESSDNNSVVLEAKSSSLDTKVAMSYGNNFVSNGFEFAEKKLLLKGTKLKSVVGVGVSENSDSRCFRYGPKTKRVDSDVSHDEFKRPKIGDKSGFEDCSFELNRGRSKCSVTLLKKLVIKDFDCDRTDGKRANYDSLSHKFVGISSKKRTNGSTNDEIYENGRKGWKYEKDNDSYDSTYESDENSSESDSYPAPRYLNSKSLNGKKSSKTKKKKLKSKKSREHECPICYKIFKSGQALGGHKRSHFIGGSEENTLVIKQSAPVVPCLIDLNLPAPVDD 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi385g00011 491 SUPERFAMILY beta-beta-alpha zinc fingers 92 458 IPR036236 -
Sebi385g00011 491 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Sebi385g00011 491 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Sebi385g00011 491 MobiDBLite consensus disorder prediction 397 417 - -
Sebi385g00011 491 MobiDBLite consensus disorder prediction 117 157 - -
Sebi385g00011 491 MobiDBLite consensus disorder prediction 388 432 - -
Sebi385g00011 491 ProSitePatterns Zinc finger C2H2 type domain signature. 438 458 IPR013087 -
Sebi385g00011 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Sebi385g00011 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Sebi385g00011 491 Pfam C2H2-type zinc finger 6 31 - -
Sebi385g00011 491 Pfam C2H2-type zinc finger 436 458 - -
Sebi385g00011 491 Pfam C2H2-type zinc finger 93 115 - -
Sebi385g00011 491 SMART c2h2final6 91 113 IPR013087 -
Sebi385g00011 491 SMART c2h2final6 6 28 IPR013087 -
Sebi385g00011 491 SMART c2h2final6 436 458 IPR013087 -
Sebi385g00011 491 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Sebi385g00011 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 436 458 IPR013087 -
Sebi385g00011 491 MobiDBLite consensus disorder prediction 117 142 - -
Sebi385g00011 491 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 490 - -
Sebi385g00011 491 MobiDBLite consensus disorder prediction 418 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi385g00011 Sebi-Chr385 328050 329525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi385g00011 1 491 C2H2 Transcription Factor Family AT1G26610 42.278 2.61e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi385g00011 zf-C2H2_6 4.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi385g00011 - - vun:114177115 536.954