Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00060 ATGTCTCACCTGACACCCCAACCTCCCAACTCAGTCACCAACGACAGGCTCCCTTTCTTTAACCAATCCATGGAGCTTGTCCAAGCACCTAGAACCCGAACCCGAACCCATCTCTCTCCCACCCTCGGCGAACTTCTCAAACGCGTGGAAGATGCTCAAAACGACATCAACAACACAAGTGCTGAACAACACCACGTTCTCGACCTTTCCTCTTCTTCCTCCTCCACCCTTCCCTCTTATCCATTTTTCCTTTCCTTCAGTAACTTAACATACAGTGTGAAGCTCCGCCGCAAGATGACTCTCTCCCCATGCTTTTCCTCTCACCACAATTCCTCGCCTACAAACCAGGAAGTCGAAACCAAACCCAACCGCACCAAGATTCTCCTCAACGAAATCTCCGGCGAGGCCAGAGACGGCGAGATCATGGCCGTTCTCGGCGCTAGCGGCTCCGGCAAGTCAACTCTAATCGACGCCCTCGCTAACCGGATTTCCAAAGAGAGCTTAAAAGGAACCTTGACATTAAACGGCGACGTTTTAGAGTCCAGTCTCCTGAAGGTGATTTCTGCTTACGTCATGCAAGACGACCTCCTTTTCCCCATGCTTACCGTGGAAGAGACGCTTATGTTCTCAGCAGAATTCAGACTCCCTCGCTCTCTCTCCAAATCCAAGAAAAAAGCGCGCGTTCAAGCTCTCATCGACCAGCTCGGCCTCCGCACCGCCGCGAAAACAATCATCGGTGACGAAGGTCACCGCGGCGTCTCCGGCGGCGAACGCCGCCGCGTCTCCATCGGAATCGACATTATCCACGATCCAATCCTTTTGTTCCTGGACGAACCAACCTCTGGACTGGACTCCACCAGCGCATTCATGGTGGTGAAGGTATTGCAGCGAATCGCTCAGAGCGGAAGCATCGTCATCATGTCCGTTCATCAACCAAGCTACAGAATCCTCGGGTTGTTAGACCGCCTCATCTTCCTCTCCCACGGCCAAGCCGTCTACAGCGGTTCTCCGGCGAACCTCCCGAGCTTCTTCTCGGAGTTCGGCCATCCTATACCGGAAAACGAGAACCGCACAGAGTTCGCACTGGATCTAATCCGCGAACTGGAAGAAACACCAGGCGGAACCAAAAGCCTAGTGGAGTTCAACAAATCATGGCAGTTAAAAAACAAATCAGTAACTGAAAAATCCATCAACGGACCAACAGCGTCACTGAAGGACGCCATCAGCGCAAGCATTTCAAGGGGGAAATTAGTGTCCGGCGCCAGCGGTAATAACTCACCAACCTCAGTCCCTACCTTCGCCAATCCGTTTTGGATCGAAATGGCGGTTATAGCAAAACGATCTCTAACTAACTCCAGGCGGATGCCTGAAGTATTTGGAATCCGTTTGGGTGCAATTTTAGTTACAGGAATAATCCTGGCCACGATCTTTTGGCGCTTGGACAATTCCTCCAAAGGTGTTGTAGAGCGTTTGGGATTCTTCGCCTTTGCCATGTCAACAACCTTCTACACCTGCGCTGAAGCCATACCGGTTTTCCTCCAAGAGCGTTACATCTTCATGAGAGAAACCGCTTACAACGCTTACCGCCGTTCCTCCTATGTTCTCGCTCACTCCATCATCTCCGTTCCTTCTCTCGTCTTCCTCTCCTTCGCGTTCGCCGCCACCACGTTCTGGGCGGTAGGCCTCGCCGGCGGCATTTCCGGTTTTCTGTTTTACTTCTTCATCATAGTGGCTTCCTTCTGGGCGGGGAGCTCCTTCGTGACGTTCCTCTCAGGGATCGTGCCGCACGTGATGCTTGGTTTTACTGTTGTGGTTGCTATCTTAGCTTACTTCTTACTCTTCAGTGGATTCTTCATCAGTAGAGATAGGATCCCTGAGTATTGGCTATGGTTCCATTACCTGTCTCTGGTGAAGTATCCTTACGAAGGAGTGTTGCTGAACGAGTTCGGTACTCAGCCTCCGAGGTGCTTCGTGAGGGGGACTCAGATGTTTGACAATACGCCGCTGGGGAATATTCCGGAGTCGATGAAGGAGTTGCTGTTGAAGGGAATGAGCAGCACGTTGGGGTTGAATATCACAAGCTCAACCTGCGTCGTTACTGGAGAGACGGTACTGAAGCAGCAGGGGATCACGGAGTTCAGCAAGTGGAACTGCTTGTGGATCACCGTTGCTTGGGGATTTCTCTTTCGATTCCTTTTTTACTTGACGCTGCTGTTTGGGAGCAAGAACAAGAGGAGTGAAATGCATGATAAGGAGCCGATCTACTTTGAAAGGGTTAGGTTTTCGGAGAAACAGCGAACCACTCGAAGCCAGAAGAAATCAACAATGCCTCGCTATGATGATAAATATGGTAACACCCGCCTCTATGTGGGTCGCTTGTCTTCAAGGACACGTTCCCGTGATCTGGAGCGAGTCTTTAGCAGATATGGAAGAGTTCGAGATGTGGATATGAAGCATGACTACGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACTTGGATGGTCGTGATGTTGATGGAAGTCGTATTGTTGTGGAATTTGCAAAAGGGGTTCCCCGTGGTTCCCGGGAATATTTGGGTCGAGGTCCACCTCCTGGAACTGGACGCTGCTTTAACTGTGGCATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGTGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGTAGACATGCACGTAGTGTTTCACGTTCACCGGTCAGGTCGCGATCTCCTAGGCGTGGCAGAAGCCGAGATCGAAGTTACAGTCCAGCCCGCAGCTACAGCCGATCTAGATCCCCTGTCAGAAGAGATAGAAGCCCTGTTCCTGAAGATAGATCACGGAGTCCTCAGCCCTCCAAGGCAAGGAGGCATAGTCCATCTCCTGACCAAGGCAGCCCACAGAAGAGAAGTGACACCTCTCCAGGTAATGAAAGGATGGTCACCACCCAAGATGGGTCTGACTACAGTGATGGTCCTAGAGCGAAGAGTAGAAGCCCTGCAAGGGACCACGATGATAGGGGCTATGATAGCCCTAAAGATAATGGGCGCAGCCGCAGTCCTAGCCGCAGTCCTAGGGATGATGACAGGAGCCCTATTGATGATGAAGATGACAACCACCGCCACTCACAGTCACCTTAG 3210 0.5118 MSHLTPQPPNSVTNDRLPFFNQSMELVQAPRTRTRTHLSPTLGELLKRVEDAQNDINNTSAEQHHVLDLSSSSSSTLPSYPFFLSFSNLTYSVKLRRKMTLSPCFSSHHNSSPTNQEVETKPNRTKILLNEISGEARDGEIMAVLGASGSGKSTLIDALANRISKESLKGTLTLNGDVLESSLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKSKKKARVQALIDQLGLRTAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSHGQAVYSGSPANLPSFFSEFGHPIPENENRTEFALDLIRELEETPGGTKSLVEFNKSWQLKNKSVTEKSINGPTASLKDAISASISRGKLVSGASGNNSPTSVPTFANPFWIEMAVIAKRSLTNSRRMPEVFGIRLGAILVTGIILATIFWRLDNSSKGVVERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISVPSLVFLSFAFAATTFWAVGLAGGISGFLFYFFIIVASFWAGSSFVTFLSGIVPHVMLGFTVVVAILAYFLLFSGFFISRDRIPEYWLWFHYLSLVKYPYEGVLLNEFGTQPPRCFVRGTQMFDNTPLGNIPESMKELLLKGMSSTLGLNITSSTCVVTGETVLKQQGITEFSKWNCLWITVAWGFLFRFLFYLTLLFGSKNKRSEMHDKEPIYFERVRFSEKQRTTRSQKKSTMPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRDVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIVVEFAKGVPRGSREYLGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHARSVSRSPVRSRSPRRGRSRDRSYSPARSYSRSRSPVRRDRSPVPEDRSRSPQPSKARRHSPSPDQGSPQKRSDTSPGNERMVTTQDGSDYSDGPRAKSRSPARDHDDRGYDSPKDNGRSRSPSRSPRDDDRSPIDDEDDNHRHSQSP 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00060 1069 Pfam ABC transporter 129 281 IPR003439 GO:0005524
Sebi384g00060 1069 Gene3D - 895 939 - -
Sebi384g00060 1069 Gene3D - 866 894 - -
Sebi384g00060 1069 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 113 353 IPR003439 GO:0005524
Sebi384g00060 1069 Pfam ABC-2 type transporter 443 649 IPR013525 GO:0016020|GO:0140359
Sebi384g00060 1069 Gene3D - 116 344 IPR027417 -
Sebi384g00060 1069 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 866 894 - -
Sebi384g00060 1069 MobiDBLite consensus disorder prediction 977 1013 - -
Sebi384g00060 1069 SMART rrm1_1 787 852 IPR000504 GO:0003723
Sebi384g00060 1069 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 786 856 IPR000504 GO:0003723
Sebi384g00060 1069 SUPERFAMILY RNA-binding domain, RBD 781 874 IPR035979 GO:0003676
Sebi384g00060 1069 MobiDBLite consensus disorder prediction 1014 1069 - -
Sebi384g00060 1069 MobiDBLite consensus disorder prediction 909 1069 - -
Sebi384g00060 1069 Coils Coil 42 62 - -
Sebi384g00060 1069 MobiDBLite consensus disorder prediction 939 975 - -
Sebi384g00060 1069 Pfam Zinc knuckle 875 890 IPR001878 GO:0003676|GO:0008270
Sebi384g00060 1069 Pfam Zinc knuckle 896 913 IPR001878 GO:0003676|GO:0008270
Sebi384g00060 1069 SMART c2hcfinal6 897 913 IPR001878 GO:0003676|GO:0008270
Sebi384g00060 1069 SMART c2hcfinal6 875 891 IPR001878 GO:0003676|GO:0008270
Sebi384g00060 1069 SUPERFAMILY Retrovirus zinc finger-like domains 866 914 IPR036875 GO:0003676|GO:0008270
Sebi384g00060 1069 ProSiteProfiles Zinc finger CCHC-type profile. 875 890 IPR001878 GO:0003676|GO:0008270
Sebi384g00060 1069 ProSiteProfiles Zinc finger CCHC-type profile. 897 913 IPR001878 GO:0003676|GO:0008270
Sebi384g00060 1069 CDD RRM1_SRSF4_like 787 856 - -
Sebi384g00060 1069 Gene3D - 758 864 IPR012677 -
Sebi384g00060 1069 FunFam ABC transporter G family member 6 118 344 - -
Sebi384g00060 1069 ProSitePatterns ABC transporters family signature. 253 267 IPR017871 GO:0005524|GO:0016887
Sebi384g00060 1069 SMART AAA_5 138 330 IPR003593 GO:0016887
Sebi384g00060 1069 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 788 849 IPR000504 GO:0003723
Sebi384g00060 1069 FunFam Serine/arginine-rich splicing factor RS2Z32 778 861 - -
Sebi384g00060 1069 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 60 734 - -
Sebi384g00060 1069 MobiDBLite consensus disorder prediction 916 938 - -
Sebi384g00060 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 345 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00060 Sebi-Chr384 792261 804503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00060 117 313 Calmodulin-binding Proteins AT2G36910 30.435 3.60e-10 62.4