Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00045 ATGGCAATGGCTCCCTCAACTTCCACCAATGGTTCTGGCAAGAAAGTCAGAAAACCTTACACTATTACCAAGTCTAGGGAAAGCTGGTCTGAGGAAGAGCATGACAAGTTTCTAGAAGCTCTTCAACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCTAAAACGGTTATTCAGATTCGAAGCCATGCCCAAAAATACTTCTTGAAAGTTCAAAAAAGTGGGACAGCAGCACATGTGCCTCCACCTCGTCCTAAGCGCAAAGCTACTCATCCTTACCCACAAAAGGCTTCAAAAAATGTTTTGGTGCCATTGCCAGCATCCATGGCTTATGTGTCTTGTTCCACTAATGCCCTTGCACATGGCTGTACTAAATGGAACTTTCTACCACTTATTATGTTATACGACGGTACTGATTCAGCTGATATTGGATCAAAGGGGATAATACGAATTGGCAACAACAGTCTTAATGGTGTTGGGAACTCTGGTAGAAAGCTTCCAGCTTCTGAGATGCCAAAGCAAGGGAAACAGATTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTTATTGGAAGTGTTTTTGATCCAGATACAAAAAACCATATCCACAAGCTTCAGGAAATGGATCCTATAAATTTTGAAACTGCTTTGTTGTTGATGAAAAACCTCACAGTCAACTTGTCTAGCCCTGACTTTGAGCCCGTTGGGAAGGCCTTATCAGTATACGATGTCAATACCAAGACAGTAGGAGTTACTGCAGGAATTGATGCCAAGAAACAGACAAATGATCTATCATGTCAAACCACTTGA 831 0.4128 MAMAPSTSTNGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKSGTAAHVPPPRPKRKATHPYPQKASKNVLVPLPASMAYVSCSTNALAHGCTKWNFLPLIMLYDGTDSADIGSKGIIRIGNNSLNGVGNSGRKLPASEMPKQGKQIPVLHGLPDFAEVYSFIGSVFDPDTKNHIHKLQEMDPINFETALLLMKNLTVNLSSPDFEPVGKALSVYDVNTKTVGVTAGIDAKKQTNDLSCQTT 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00045 276 SMART sant 25 73 IPR001005 -
Sebi384g00045 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Sebi384g00045 276 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Sebi384g00045 276 ProSiteProfiles SANT domain profile. 24 75 IPR017884 -
Sebi384g00045 276 PANTHER SWI/SNF COMPLEX-RELATED 12 235 - -
Sebi384g00045 276 CDD SANT 28 71 IPR001005 -
Sebi384g00045 276 Gene3D - 29 76 - -
Sebi384g00045 276 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Sebi384g00045 276 FunFam protein REVEILLE 6 isoform X1 28 76 - -
Sebi384g00045 276 MobiDBLite consensus disorder prediction 77 97 - -
Sebi384g00045 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Sebi384g00045 276 MobiDBLite consensus disorder prediction 1 16 - -
Sebi384g00045 276 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Sebi384g00045 276 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00045 Sebi-Chr384 605190 608706 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi384g00045 Myb_DNA-binding 9.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00045 - - gmx:100783482 434.876