Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00039 ATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTATGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTGATTTGAAAGAAAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAATATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTTCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGGCATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAAGAAAGTTATCAAGGAAGAGAAGAATTAG 1620 0.3599 MEALSIRYGELKSESLGYGGLSYFKDNNNKPMIELVVLEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTMVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIADLKENSVFVTIGTVKDIESEYNWCYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPYVINISRLCFEDNIIAFFEKKYQIEEVALIQDNSELLSQFTESSDLLKDNLSVSCDNGVDTPSPLLPTGKTASNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGDEQSAKKLKKVIKEEKN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00039 539 SUPERFAMILY Nucleic acid-binding proteins 26 103 IPR012340 -
Sebi384g00039 539 Gene3D - 256 421 IPR012340 -
Sebi384g00039 539 Pfam Domain of unknown function DUF223 38 124 IPR003871 -
Sebi384g00039 539 CDD RPA1_DBD_B_like 130 235 - -
Sebi384g00039 539 Pfam Replication factor-A C terminal domain 278 396 IPR013955 -
Sebi384g00039 539 Gene3D - 20 103 IPR012340 -
Sebi384g00039 539 Gene3D - 104 245 IPR012340 -
Sebi384g00039 539 SUPERFAMILY Nucleic acid-binding proteins 110 236 IPR012340 -
Sebi384g00039 539 CDD RPA1_DBD_C 269 396 IPR047192 -
Sebi384g00039 539 PANTHER OS03G0429900 PROTEIN 165 409 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi384g00039 539 SUPERFAMILY Nucleic acid-binding proteins 267 402 IPR012340 -
Sebi384g00039 539 CDD RPA1_DBD_A_like 27 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00039 Sebi-Chr384 571090 573632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00039 41 361 Core DNA Replication Machinery Family AT2G06510 24.496 9.42e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00039 - - adu:107477146 417.927