Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00038 ATGGGCAACTGTGGTGGAAAGATGTCAAGTAACCGAGGCAATGAAGGGTGTTGGGTGATTAGGGTTCCGGCGACTATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGAAGTCACGAGAGCGGCGAGCACAGCCCTCGTTCTAACATCCGTGAGCAGGACAGATTCCTTCCTATCGCCAACATCAGTCGCATCATGAAGAAGGCACTCCCTGCCAATGGAAAAATCGCCAAGGATGCTAAAGAGACCGTTCAAGAGTGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAAACCATTAACGGCGACGATTTGCTCTGGGCGATGGCCACTCTTGGTTTCGAGGATTATATTGATCCCCTTAAGATTTACCTCAGCAGATACAGAGAGATGGAGGGTGATACCAAGGGTTCTGCCAAGGGTGGAGACTCATCTGCCAAGAAAGATGTTCAACCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAAGTGTGAATTACGCAAATTCTCAGGTAACTACTATCTTTCTCTAA 573 0.4991 MGNCGGKMSSNRGNEGCWVIRVPATMADGPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREMEGDTKGSAKGGDSSAKKDVQPSPNAQLAHQGSFSQSVNYANSQVTTIFL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00038 190 MobiDBLite consensus disorder prediction 158 172 - -
Sebi384g00038 190 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 39 173 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sebi384g00038 190 MobiDBLite consensus disorder prediction 28 52 - -
Sebi384g00038 190 FunFam Nuclear transcription factor Y subunit B-3 44 168 - -
Sebi384g00038 190 SUPERFAMILY Histone-fold 52 155 IPR009072 GO:0046982
Sebi384g00038 190 ProSitePatterns NF-YB/HAP3 subunit signature. 86 102 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sebi384g00038 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 55 119 IPR003958 -
Sebi384g00038 190 Gene3D Histone, subunit A 42 182 IPR009072 GO:0046982
Sebi384g00038 190 MobiDBLite consensus disorder prediction 144 172 - -
Sebi384g00038 190 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Sebi384g00038 190 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Sebi384g00038 190 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00038 Sebi-Chr384 537178 541663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00038 26 177 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.874 4.19e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi384g00038 CBFD_NFYB_HMF 9.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00038 K08065 - gmx:100820170 288.885