Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00035 ATGGAGGACACTCCGTTTGTACTAGGGTTAGGGTTTTGCTCTGCGGCTGCTTCATCCACTCCATCGTCTCCGAACTCGTTCAACTCGTATCGGAAGACACGAGGAATGGGAGCTGCCCGCAAGCTAAAGTCCCACCGTAGGAGGCAAAGGTGGGCAGACAAGGCATACAAAAAATCTAATCTTGGCAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCGAAGGGTATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCTGCTTTTGTGCCAAATGATGGTTGTTTAAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGTAAAGGTCATGCCGTGGGTGATATTCCTGGTGTTAGATTCAAGGTTGTGAAGGTTTCTGGTGTCTCTCTCCTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 516 0.4593 MEDTPFVLGLGFCSAAASSTPSSPNSFNSYRKTRGMGAARKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00035 171 Gene3D - 54 171 IPR012340 -
Sebi384g00035 171 ProSitePatterns Ribosomal protein S12 signature. 88 95 IPR006032 GO:0003735|GO:0005840|GO:0006412
Sebi384g00035 171 FunFam 40S ribosomal protein S23 54 171 - -
Sebi384g00035 171 SUPERFAMILY Nucleic acid-binding proteins 49 169 IPR012340 -
Sebi384g00035 171 NCBIfam 30S ribosomal protein S12 35 170 IPR005680 GO:0003735|GO:0006412|GO:0015935
Sebi384g00035 171 MobiDBLite consensus disorder prediction 17 32 - -
Sebi384g00035 171 CDD Ribosomal_S23 55 168 IPR005680 GO:0003735|GO:0006412|GO:0015935
Sebi384g00035 171 MobiDBLite consensus disorder prediction 17 50 - -
Sebi384g00035 171 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 31 171 IPR006032 GO:0003735|GO:0005840|GO:0006412
Sebi384g00035 171 MobiDBLite consensus disorder prediction 36 50 - -
Sebi384g00035 171 Pfam Ribosomal protein S12/S23 61 170 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00035 Sebi-Chr384 502312 503724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00035 32 171 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.000 2.04e-93 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00035 K02973 - psom:113313821 283.108