Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00025 ATGGCTATAGATAACATATCTTTCCCTTCTCATTGGAACTCCACCACAAGGTCAAATGGATATGCATCCTCAAGTCTCAACATTGAAGTGCCTCCTCATCAATCAGATGCATCAGGCACTTCTAATGATCATTTTATGCATTCATCTAGTGCTGGAGCGTTTTTTGCAGTGTCTGAAAATTATGTACACCAGCCTTCTTCATCTAATTATGATAGACAAGCATTCCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTACAAGCAGATATTTCAATGCTGGGAGTTCAACTGATCTTCCTATGTCTTCAGAATCACGGCCAGAGAAGCCAAATGTGGATTCTCAATATATGCCCTGGGATCATGTTGCTATGGCACCCACATTTAGAGGTGCTAGCCTCTCAATAAAGGGTGAGAGTTCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCAAGTAATCATTCACACAATTCCTACTCTGCTGTCCCACCAGTTGACCATTCAAGCATGGTGGATCTTTCTGGTCAGATTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACATATCTCCTGCTAATGGAAGGGTGTTATTACCAGATACTAGTGCTTTTGGTTTTGAGACAAATCACTTCCTTGTTGGAAGTGGTGCTACTGCTAGTAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAATATGGTACAAACAGAAATCCTACTGCTCCTCAAAGTTTTCATAATCCGACTCAGACCACTAGGGGAATTCGAAGTAACTATTCTCAGAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACACCTTCAGATGATGGATTACCTATGGTAGCTGAAAGTTACAATTCTAGACACCCAAGATCGTTGGCTACCATTGGCTGGAGGAACGGTGATAGAAATGGGAGGTCCAGAGTTTCTAGTGAGAGATATCGATCATTGGCTGATGAGGCTGGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGATTGTTGAGCGCGCTTCACTGTATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGATGGACATAGATAACATGAGCTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCCATGTGAACACAGGAATGTCTGAGGATTTGATTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAGTTGTGTAGTCTGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1500 0.4273 MAIDNISFPSHWNSTTRSNGYASSSLNIEVPPHQSDASGTSNDHFMHSSSAGAFFAVSENYVHQPSSSNYDRQAFHVDGGFIDLTMGSGRGPHKRKSPGIPSVYERGSTSRYFNAGSSTDLPMSSESRPEKPNVDSQYMPWDHVAMAPTFRGASLSIKGESSLRNVRSRSALDLESNLARTHLSSNHSHNSYSAVPPVDHSSMVDLSGQISTSLTRDWSQMNISPANGRVLLPDTSAFGFETNHFLVGSGATASNASVDVGGFHHEYGTNRNPTAPQSFHNPTQTTRGIRSNYSQRSTPTFRASSSLRLGHVTPSDDGLPMVAESYNSRHPRSLATIGWRNGDRNGRSRVSSERYRSLADEAGLHDRFSSEGFMIVERASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVNTGMSEDLISKCLTETIYCSSEQSQDEGSCVVCLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKVCPICKASALPEDKKDK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00025 499 Pfam Ring finger domain 445 488 IPR001841 -
Sebi384g00025 499 MobiDBLite consensus disorder prediction 270 311 - -
Sebi384g00025 499 SUPERFAMILY RING/U-box 436 492 - -
Sebi384g00025 499 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 492 IPR045191 GO:0061630
Sebi384g00025 499 ProSiteProfiles Zinc finger RING-type profile. 446 488 IPR001841 -
Sebi384g00025 499 MobiDBLite consensus disorder prediction 103 132 - -
Sebi384g00025 499 CDD RING-H2_RNF24-like 446 491 - -
Sebi384g00025 499 MobiDBLite consensus disorder prediction 19 43 - -
Sebi384g00025 499 SMART ring_2 446 487 IPR001841 -
Sebi384g00025 499 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 411 492 - -
Sebi384g00025 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 492 IPR013083 -
Sebi384g00025 499 MobiDBLite consensus disorder prediction 86 133 - -
Sebi384g00025 499 MobiDBLite consensus disorder prediction 266 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00025 Sebi-Chr384 376250 378314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00025 1 498 C3H Transcription Factor Family AT2G37150 43.676 3.86e-106 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00025 - - gmx:100803627 887.871