Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00022 ATGGACAAAGATCCTAATTCAGAAATCCAACTCCCCCCTGGATTTAGATTCCACCCTTCTGATGAGGAACTCATTGTTCACTATCTGAGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCCAAGCAAAGCTTTGTTTGGGGAAGATGAATGGTATTTCTTTACACCTAGGGACAGGAAGTATCCTAATGGAGTGAGGCCTAATAGAGCAGCTGGTTCAGGTTATTGGAAGGCTACTGGGACTGACAAACCTATTCTTACTTCATGTGGGATGAAGAGCATTGGAGTGAAGAAGGCCCTTGTGTTTTACAAGGGACGTCCACCAAAAGGATCTAAATCTGATTGGATCATGCATGAGTATAGGTTGCATGATTCAATGATCTCTATTTCCAAACAAAGAGGGTCTATGAGACTGGATGAGTGGGTGTTATGCAGAGTTCGACAGAAAGCTAGCAGCCCAAGAAGCAATTGGGAAGATTCAAATGAAGCTAGCTATGAACCAATAGGCCAAATTCAACAAATGAATGAGAACTCTAATCCTGAACCAGTGAAAAACTCTGTGCAGAATGAATATCCAATGTTACCTTATATTTTGGCTTCTAAGAGTGCTCTGCCTAATTCAATTGGTATGGCCTCATGCTCAGGCTTTCATTGTAATGATGACATAAAAGCATATTCATTGCATGAAGACAACTTGGACATATTAGGGGCTCAGTTCTTAGCATCTGCAACAGAGGGCTTGTTTAATCCACTGAAGAGAAAAGCAATTGAAGAAAATAACTTGGATTTTTATGCTCCCATCAATCAAAAGCTAAGCAGAGAAGTTGATGATGGGAATCAAAGAGTTGAGATAGAAGTAAGCAAAGGCTATAATTTCAACAACTTTGACCAGTGGACTTCGATCATACAACCTCAAGAGCTTAATAGCTTAGCTTTTACGGGATATACAAGAGTAGTTTAG 1008 0.3998 MDKDPNSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKSDWIMHEYRLHDSMISISKQRGSMRLDEWVLCRVRQKASSPRSNWEDSNEASYEPIGQIQQMNENSNPEPVKNSVQNEYPMLPYILASKSALPNSIGMASCSGFHCNDDIKAYSLHEDNLDILGAQFLASATEGLFNPLKRKAIEENNLDFYAPINQKLSREVDDGNQRVEIEVSKGYNFNNFDQWTSIIQPQELNSLAFTGYTRVV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00022 335 FunFam NAC transcription factor 20 169 - -
Sebi384g00022 335 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Sebi384g00022 335 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Sebi384g00022 335 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Sebi384g00022 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 216 - -
Sebi384g00022 335 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00022 Sebi-Chr384 351024 352265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00022 6 170 NAC Transcription Factor Family AT1G69490 68.485 2.89e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi384g00022 NAM 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00022 - - gmx:100788799 569.311