Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00021 ATGCAAATGATGCCCTGTGACCCCTTTTCCATTGGAGGAACTTCCAAAGAGCAAAACACAAACCCTAACCCTAATCCCCCTCCACCTTCCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTCATTGCTCTTTCACCAAAGACTCTCATGGCCACCAACCGTTTCATCTGTGAGATATGCAACAAAGGTTTCCAGAGGGATCAGAACCTTCAACTTCACAGAAGGGGACATAACCTTCCATGGAAGCTGCGTCAGAGGTCCAACAAAGAGACTAAGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGACGCCGCCAGGGCACTCGGAGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAACATGGAGAGAAGAAGTGGAAGTGTGAGAAGTGTTCCAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACCAAAACTTGTGGCACTAGAGAATATAAGTGTGATTGTGGAACCCTCTTCTCCAGGAAGGACAGTTTTATTACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAGAGTGCTAGACTAACTTCAGTTGCTACCACCAATACTCTAAATTTTAAGAGTGAAGAGGCAAGTTTGATGAACACAGTACAATCTAGTTTGGCACATGGATTAATAGCTGGTAATGGTCAGGGACTTCAAAATGTTGTTGGGGTTTCTCCACAGTTTGGTCCACATGGATTTCATGTAGATTTTAATGGAATTGGTATGTGTGGAGAGCAGCAAAGGCCAAACTTGTCATTATGGTTGAACCAAGGAAATCAACAGATGAATAGTACTAATCTACTTGATCATGAGGTTGTGCAGCAAATGACACAAGCTAATAATGCTTTAATTGGTTCTTCTTCTAATTTTGGAATGTCTGCTTCCAATTCATGTACCTTACCATTGGGGAAAAAAGCAGAATGTGGAACTGAATATTTATCAGCTTCTCCAATGTCAGCCACTGCCCTTCTGCAGAAAGCAGCACAAATGGGTTCAACAAGAAGCAGTGACAATAATAACTCTTCCATTTTCAGTGGCAGTTTTGGAGTAATGACCTCATCTTCCACTACCAATGCTAATGACCAAAACTGTGAAGAGCTTAACCGTGCATTTCAGAATATGAACCAACCACAGAATTTTAATCCAACTACTAGCTTTGGTTCATTTCCACATAATTCATCACATGGTTTTGATCATCCAATGAAGCTTCATCATCATGGTTCAAATAGAGTGGAACATAATAATAACTTGACAAGAGATTTTCTTGGTATGAGTGGAGGAGGAGGAGTTGGCCATCCATTCCTACCACAAGAGCTAGCAAAGTTTGCTTCCATTGGCTCATCCATGAGTTTGAACCAATTTACTGCAAGCCATCAATGA 1422 0.4191 MQMMPCDPFSIGGTSKEQNTNPNPNPPPPSKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKETKKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVATTNTLNFKSEEASLMNTVQSSLAHGLIAGNGQGLQNVVGVSPQFGPHGFHVDFNGIGMCGEQQRPNLSLWLNQGNQQMNSTNLLDHEVVQQMTQANNALIGSSSNFGMSASNSCTLPLGKKAECGTEYLSASPMSATALLQKAAQMGSTRSSDNNNSSIFSGSFGVMTSSSTTNANDQNCEELNRAFQNMNQPQNFNPTTSFGSFPHNSSHGFDHPMKLHHHGSNRVEHNNNLTRDFLGMSGGGGVGHPFLPQELAKFASIGSSMSLNQFTASHQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00021 473 SMART c2h2final6 101 131 IPR013087 -
Sebi384g00021 473 SMART c2h2final6 136 156 IPR013087 -
Sebi384g00021 473 SMART c2h2final6 60 82 IPR013087 -
Sebi384g00021 473 FunFam protein indeterminate-domain 12-like 39 107 - -
Sebi384g00021 473 MobiDBLite consensus disorder prediction 21 35 - -
Sebi384g00021 473 MobiDBLite consensus disorder prediction 389 418 - -
Sebi384g00021 473 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Sebi384g00021 473 Gene3D Classic Zinc Finger 38 114 - -
Sebi384g00021 473 MobiDBLite consensus disorder prediction 389 406 - -
Sebi384g00021 473 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Sebi384g00021 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 451 IPR031140 -
Sebi384g00021 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Sebi384g00021 473 MobiDBLite consensus disorder prediction 1 43 - -
Sebi384g00021 473 Gene3D Classic Zinc Finger 115 193 - -
Sebi384g00021 473 Pfam Zinc-finger double-stranded RNA-binding 60 82 IPR022755 -
Sebi384g00021 473 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00021 Sebi-Chr384 327377 329324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00021 1 460 IDZ Gene Family AT5G03150 49.419 4.02e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi384g00021 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00021 K25870 - gmx:100812495 594.349