Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00020 ATGCTTAATCTCGTCGGTTTCTCGTTGTTGAATATGGACTCTGTGGCGTACAGGGGGTTTCTCTACACATTCTTCATTCTCCTTCAACCTCTCGTTTCTGCTTCAGGTGGAAAGTCTGGAAATGCTGCTGATTTGTTTGAGAGGGCATCACAAAGTATAAAAGTGAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCTATAGAAGCAGATCCAACCCTTTCAGAAGCATACCTTTTCCGTGCCTCAGTTCTTCGTCAGTTATGCAGATATGAGCTATCTGAGGGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGACACTCAGCTGCAGAAAAGGAGCTCTCTCAACTGTTGCAGGCTCGAAGTTCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGCAACTTCACAAAATCCTTGGAATATATTGATAAAGTTGTGCTTGTTTTTTCTCCAGCTTGCACTAAGGCTAAGCTTCTTAAAGTAAAGTTGCTGATAGCTGACAAAGAGTATGAGGGCGCCATTGCAGAGTCTGGGTATATTCTCAAGGAAGATGAAAATAATTTAGAAGCATTACTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCAACAAGGCATTTCCAAAAAGGTCTTCGCCTAGATCCAGAACACAGTGAACTAAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAGCTGCTGAAGATAATGCGGATAAGGGTAAGCTAAGGGTGGCGGTGGAGGACTTCAAAAGTGCACTTGCTGTTGACCCTAACCATCTTGCACATAATGTACATCTTTATCTTGGCTTATGTAAAGTGCAAGTCAGGCTTGGCAGAGGAAAAGATGCCTTGAACAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAGCTAGTTGAAGCTCTTGTTCAGAGGGGAGAAGCCAAACTCTTGACAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAAATCAGCTGCTCAACAATCTCCTCAGGATATGAATATCCGTGAAACGTTGATGAGGGCTGAAAAAGCTTTAAAGATGAGCAAACGCAAGGATTTCTACAAGATTTTGGGAATTTCAAAAACTGCTTCTGCCGCTGAGATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGACAAGAGGGAAGAAGCAGAGGCTCAATTCCGAGAAATTGCTGCTGCATATGAGGTCTTGTTCACAAATAAATGTCCTAAGTGA 1272 0.4198 MLNLVGFSLLNMDSVAYRGFLYTFFILLQPLVSASGGKSGNAADLFERASQSIKVKHYTEALDDLNAAIEADPTLSEAYLFRASVLRQLCRYELSEGSYKKFLELKPGHSAAEKELSQLLQARSSLETAQSLYDLGNFTKSLEYIDKVVLVFSPACTKAKLLKVKLLIADKEYEGAIAESGYILKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKAAEDNADKGKLRVAVEDFKSALAVDPNHLAHNVHLYLGLCKVQVRLGRGKDALNSCSEALKINEELVEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRETLMRAEKALKMSKRKDFYKILGISKTASAAEIKRAYKKLALQWHPDKNVDKREEAEAQFREIAAAYEVLFTNKCPK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00020 423 Gene3D Tetratricopeptide repeat domain 34 358 IPR011990 GO:0005515
Sebi384g00020 423 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Sebi384g00020 423 ProSiteProfiles dnaJ domain profile. 363 423 IPR001623 -
Sebi384g00020 423 Coils Coil 109 129 - -
Sebi384g00020 423 CDD DnaJ 363 416 IPR001623 -
Sebi384g00020 423 Coils Coil 234 254 - -
Sebi384g00020 423 SUPERFAMILY Chaperone J-domain 329 417 IPR036869 -
Sebi384g00020 423 FunFam DnaJ domain containing protein 29 360 - -
Sebi384g00020 423 Pfam Tetratricopeptide repeat 56 109 - -
Sebi384g00020 423 SUPERFAMILY TPR-like 47 358 IPR011990 GO:0005515
Sebi384g00020 423 Gene3D DnaJ domain 359 420 IPR036869 -
Sebi384g00020 423 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 21 416 IPR044620 -
Sebi384g00020 423 SMART dnaj_3 362 421 IPR001623 -
Sebi384g00020 423 SMART tpr_5 76 109 IPR019734 GO:0005515
Sebi384g00020 423 SMART tpr_5 275 308 IPR019734 GO:0005515
Sebi384g00020 423 SMART tpr_5 42 75 IPR019734 GO:0005515
Sebi384g00020 423 SMART tpr_5 309 342 IPR019734 GO:0005515
Sebi384g00020 423 SMART tpr_5 122 155 IPR019734 GO:0005515
Sebi384g00020 423 SMART tpr_5 237 270 IPR019734 GO:0005515
Sebi384g00020 423 SMART tpr_5 191 224 IPR019734 GO:0005515
Sebi384g00020 423 Pfam DnaJ domain 363 418 IPR001623 -
Sebi384g00020 423 Pfam Tetratricopeptide repeat 192 224 IPR013105 -
Sebi384g00020 423 PRINTS DnaJ domain signature 383 398 IPR001623 -
Sebi384g00020 423 PRINTS DnaJ domain signature 401 421 IPR001623 -
Sebi384g00020 423 PRINTS DnaJ domain signature 365 383 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00020 Sebi-Chr384 313277 318048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00020 359 416 C2H2 Transcription Factor Family AT1G74250 48.387 9.30e-09 55.5