Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00015 ATGGCAACTGAAGCACAAGCCTTTCCCAACAACAACAATAATAATAATGACCAAGGCACTCATAACTCAATTCAAGAGGATGAAGAGTCGTCTGAAATAACTGAAGAAGTCCCTAGTAGACAACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCTCAAGAACACTGGATGAAGCAAGAGAGGATTTTTTGGGAACAAACAAACCTCCAACTCCACCTCCCAGAAGACTGAATTTTTACCCCTCTACAAGCCCTCATTTATCAGGAATCAATGAGTTCCATGGTTCTTCATCTACAAAAAATAAATCAACTATTAAAACCCTCACTCCCAAACCCAATTTTAAATTCCACAACATGAGTTCAGATATTGAAACTTCCACCCTAGCACTTGAAGGTTCATCCCCAGAGCCACCAAAAAAGCCTATGATTTCAAGGACATTATCTTTTACAAAGGTGATCACACCTACAGGGAAGATTACATCATCCTTACCTATAACTCCAATTGCTCAGTCAAATCTTGAGTCTCAACATGGAGGGAACACTGCCTATCTAGCAACACCTGTTAAAAAAGGACAGCAATTACCAATACATCGTTCTCATTCAGTTCCTGTGTTTACCAAATATGGCAACACATCTGCAGGTGGCATGTTTCGTGTTGTTCCTACCACACCACGGTTAACTGGGAGTATTGCCACAGCATCTGCGAAATCTCCACCTGACGATACTGATGAAAGTGAGGATGGAGAAGATATCCCTGAAGAAGAAGCTGTCTGCAGAATTTGTTTGATTGAATTAGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGCGTGTGCAATTAAATGGTTTAGCATTAAAGGCAATAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTACCTGTCACTCTTTTGCGAGTTCCAGGTGACTTCATAAGGAGCAGAGTTCATCAATACAGGCAAACCACTGCTTTTCTTGAGGATTGTAAGCACAAAGAAAGCACTAACAAAATATCTGATGAATTTGATTTTGCAAAAGAACTTATAGGCAGGAACTTCCACAGGCCCTGGCACAATGTTCCCATTCTGGTTATTGTCAACATGCTGGCTTACTTTTGCTTTCTTGAGCAACTTCTTGTTTCAAGCATGGGATCTGGCGCCATTGCTATATCTCTCCCATTTTCTTGTATGCTGGGTCTTCTTGCAAGCATGACAACCACAACAATGGTGAGGAGAAAACATGTCTGGATTTATGCAACTTCCCAGTTTATTATGGTGATTCTCGCTGGACGTCTTTTCTACTCACTGCTTCATATGCAAGCTGTTCTATCTATCCTACTTGCTACACTCACTGGATTTGGATCTGTAATGTGTGGAGCTTTTATTCTTAGTGAGTTTTTGAATTGGAGGAGACGAAGGCTTGGTCAATTGAATCAACAGCATGGTTCCCAAGAGGTGGATCAATCATATTCATCTTCAACCACTCATCATGCTCTGACTGATACTCAACATCATGAAAATAGTATGACAGACTCTGCAGCGCGTATGACCTGA 1593 0.4143 MATEAQAFPNNNNNNNDQGTHNSIQEDEESSEITEEVPSRQHGRRKNLILEIPSRTLDEAREDFLGTNKPPTPPPRRLNFYPSTSPHLSGINEFHGSSSTKNKSTIKTLTPKPNFKFHNMSSDIETSTLALEGSSPEPPKKPMISRTLSFTKVITPTGKITSSLPITPIAQSNLESQHGGNTAYLATPVKKGQQLPIHRSHSVPVFTKYGNTSAGGMFRVVPTTPRLTGSIATASAKSPPDDTDESEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQACAIKWFSIKGNRTCDVCKQEVQNLPVTLLRVPGDFIRSRVHQYRQTTAFLEDCKHKESTNKISDEFDFAKELIGRNFHRPWHNVPILVIVNMLAYFCFLEQLLVSSMGSGAIAISLPFSCMLGLLASMTTTTMVRRKHVWIYATSQFIMVILAGRLFYSLLHMQAVLSILLATLTGFGSVMCGAFILSEFLNWRRRRLGQLNQQHGSQEVDQSYSSSTTHHALTDTQHHENSMTDSAARMT 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00015 530 CDD RING_CH-C4HC3_MARCH 259 307 - -
Sebi384g00015 530 SMART ringv_2 258 307 IPR011016 GO:0008270
Sebi384g00015 530 SUPERFAMILY RING/U-box 255 310 - -
Sebi384g00015 530 MobiDBLite consensus disorder prediction 230 252 - -
Sebi384g00015 530 ProSiteProfiles Zinc finger RING-CH-type profile. 251 313 IPR011016 GO:0008270
Sebi384g00015 530 MobiDBLite consensus disorder prediction 1 21 - -
Sebi384g00015 530 Pfam RING-variant domain 259 306 IPR011016 GO:0008270
Sebi384g00015 530 MobiDBLite consensus disorder prediction 494 530 - -
Sebi384g00015 530 MobiDBLite consensus disorder prediction 22 55 - -
Sebi384g00015 530 MobiDBLite consensus disorder prediction 1 55 - -
Sebi384g00015 530 MobiDBLite consensus disorder prediction 494 511 - -
Sebi384g00015 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 314 IPR013083 -
Sebi384g00015 530 PANTHER OS02G0165000 PROTEIN 9 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00015 Sebi-Chr384 271883 276730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00015 172 313 C3H Transcription Factor Family AT2G37950 28.276 6.94e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00015 - - gmx:100783117 580.096