Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00013 ATGAAGGAAAACCCTGTTGCACCAGTGACTATACAATTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAACCATCTGGAACTGGTATTGATTTTTCAATGTTTGAGGAGTCAGAGTTATTGAAAGTGGGTGACATAGATATCTACCCTCTAGCAGTGAAGGCAGATGCTTCCCCTTGTAATCATGATGGATCAGGTGAAACTCCAACATCTGGTAACACAAACTCTCAGATAACCCAAGCGGTTTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAAGTTATTAAACAGATCTTATGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGAGGAGAATGACCAAGGAAAAGAGTGTGTCATCTGCTTGTCAGAGCCTCGTGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGCAGTGGATGCGCAAAGGTTCTGAGGTTCCAGACAAATCGATGTCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGCCTGAGGAGTGA 555 0.4432 MKENPVAPVTIQFQQGLGQKFRQPSGTGIDFSMFEESELLKVGDIDIYPLAVKADASPCNHDGSGETPTSGNTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSVESDLEENDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00013 184 ProSiteProfiles Zinc finger RING-type profile. 130 169 IPR001841 -
Sebi384g00013 184 FunFam probable E3 ubiquitin-protein ligase LOG2 114 179 - -
Sebi384g00013 184 CDD mRING-HC-C3HC5_MGRN1-like 128 169 IPR045195 -
Sebi384g00013 184 PANTHER MAHOGUNIN 2 179 IPR045194 GO:0061630
Sebi384g00013 184 SMART ring_2 130 168 IPR001841 -
Sebi384g00013 184 SUPERFAMILY RING/U-box 129 174 - -
Sebi384g00013 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 179 IPR013083 -
Sebi384g00013 184 Pfam Zinc finger, C3HC4 type (RING finger) 128 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00013 Sebi-Chr384 256839 257657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00013 2 149 C3H Transcription Factor Family AT3G09770 62.092 5.22e-60 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00013 - - aprc:113862864 343.199