Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00012 ATGGCAAAAGACATTGAAACCGCTGCACAAGGTGGGTTACCACACAAGGACTACCACGACCCACCGCCAGCACCACTCTTCGACTCCACCGAACTCGGCAAGTGGTCCTTCTACAGAGCTCTCATCGCCGAGTTCGTTGCCACTCTGCTCTTCCTCTACATCACCGTCTTAACCGTCATTGGCTACAAAAGCCAAACAGATCCCACATCTCCCGGTTACGGCGGCGACGCTTGCAGCGGCGTTGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTCTACTGCACCGCCGGAATCTCTGGGGGTCACATAAACCCTGCGGTGACGTTTGGGTTGTTCTTGGCTCGTAAGGTGTCGTTGATTAGAGCTATAATGTATATGGTGGCTCAGTGTTTGGGTGCTATATGCGGTGTTGGTCTTGTGAAGGCTTTTCAGAGTAGCTATTACAATAGGTACAAAGGTGGTGCCAACATGCTTGCTGATGGCTATAACAAAGGCACTGGTTTAGGTGCTGAGATTATTGGAACCTTTGTTCTTGTCTACACCGTCTTCTCTGCTACCGATCCCAAGAGAAACGCCAGAGATTCTCATGTTCCCGTTTTGGCACCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCACCTTGCCACCATCCCTATCACCGGAACCGGTATCAACCCTGCTAGAAGTCTCGGTGCTGCTGTGATTTTCAATGACGAGAAAGCATGGGATGACCAGAAGCTCCTCAAACCTGTAATTCCCCTGCAAGCTACAGAGGAGGCTGAGGCTTATGTAAGGTTATGA 819 0.5092 MAKDIETAAQGGLPHKDYHDPPPAPLFDSTELGKWSFYRALIAEFVATLLFLYITVLTVIGYKSQTDPTSPGYGGDACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQSSYYNRYKGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNDEKAWDDQKLLKPVIPLQATEEAEAYVRL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00012 272 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Sebi384g00012 272 SUPERFAMILY Aquaporin-like 32 244 IPR023271 -
Sebi384g00012 272 Pfam Major intrinsic protein 32 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi384g00012 272 FunFam Probable aquaporin PIP1-2 24 272 - -
Sebi384g00012 272 NCBIfam MIP family channel protein 43 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi384g00012 272 CDD MIP 39 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi384g00012 272 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 258 IPR034294 -
Sebi384g00012 272 Gene3D Glycerol uptake facilitator protein. 24 262 IPR023271 -
Sebi384g00012 272 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi384g00012 272 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi384g00012 272 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi384g00012 272 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi384g00012 272 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00012 Sebi-Chr384 216464 217665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00012 1 254 Major Intrinsic Protein MIP AT5G60660 80.709 5.19e-150 419