Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi384g00001 ATGGAGGCAACTATTGTGAGCAACGGTCACCACCAAACCGAAAACGATTCGTTTTGCATGACTAGCAATGCTACTACTACTACTAAAGGCAGTAGTGACCCATTGAATTGGGGTCTGGCGGCGGAGTCAATGAAGGGAAGCCACTTGGATGAGGTGAAGCGCATGGTGGAGGAGTACCGTAAGCCGGTGGTGCGCCTCGGCGGCGAGACTCTGACGATCGCGCAGGTGGCAGCCATCGCCGGTCACGACCAAGGCGTGATGGTGGAACTGTCTGAGTCAGCAAGAGCTGGCGTTAAGGCGAGTAGCGATTGGGTGATGGAAAGCATGAATAAAGGCACTGACAGTTATGGAGTCACCACTGGCTTCGGTGCCACCTCTCACCGCCGAACCAAACAAGGTGGTGCTTTGCAAAAAGAGCTCATCAGGTTTTTGAACGCTGGAATATTTGGAAATGGGACTGAGTCATGCCACACATTGCCACACTCTGCAACTAGAGCAGCCATGCTTGTAAGAATTAACACTCTTCTCCAAGGGTACTCAGGCATTAGATTTGAGATCTTAGAAGCCATCACCAAGCTCATCAACAAGAATATTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCAGGAGATCTAGTCCCTCTTTCTTATATTGCCGGTTTGCTTACTGGCCGACCTAACTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCTAAGGAAGCTTTCCAATTGGCCAATATAAACTCTGATTTCTTTGAATTACAACCCAAGGAAGGTCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGCTTAGCTTCGATTGTTCTGTTTGAGGCAAACATATTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGAAAACCTGAATTTACTGACCATTTGACACATAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCGGCCAAGAAGTTGCACGAGATAGATCCCTTGCAGAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCACAATGGCTTGGTCCTCTAATTGAAGTGATTCGATTCTCAACCAAGTCAATTGAGAGGGAGATTAACTCTGTGAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGTAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCCAGTTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAATACCTTGCAAATCCAGTCACAAGCCATGTACAAAGTGCCGAACAACATAATCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACAAATGAAGCTATTGAGATCCTTAGGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAACACTCGGTCAAGAACACTGTAAGCCAAGTTGCTAAGAAGACTCTTATCACAAGTGTCAATGGAGAACTCCATCCTTCCAGATTTTGTGAAAAGGATTTGTTGCAAGTGGTTGATAGGGAGCATGTATTTGCCTATATTGATGATCCCTGCAGTGCTACCTACCCATTGATGCAAAAACTCAGGCAAGTGCTTGTGGATCATGCATTAGCAAATGGAGAAAATGAGAAGAGTTTGAACACATCAATCTTTCAAAAGATTGTAACTTTCGAGGATGAGTTGAAGACACTCTTGCCAAAGGAGGTTGAAAGTGCAAGGATTGCATATGAGAGTGGCAATTCAGTAATTCCAAACAAGATCAAAGAATGTCGATCTTACCCACTGTACAAGTTTGTGAGGGAGGATTTGGGGACAAATTTGCTAACTGGAGAAAAGGTTAGATCACCAGGTGAGGAGTGTGACAAATTGTTCACAGCAATATGTCAGG 2107 0.4428 MEATIVSNGHHQTENDSFCMTSNATTTTKGSSDPLNWGLAAESMKGSHLDEVKRMVEEYRKPVVRLGGETLTIAQVAAIAGHDQGVMVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINKNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLANINSDFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILRLMSSTFLIALCQAIDLRHLEENLKHSVKNTVSQVAKKTLITSVNGELHPSRFCEKDLLQVVDREHVFAYIDDPCSATYPLMQKLRQVLVDHALANGENEKSLNTSIFQKIVTFEDELKTLLPKEVESARIAYESGNSVIPNKIKECRSYPLYKFVREDLGTNLLTGEKVRSPGEECDKLFTAICQ 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi384g00001 702 FunFam Phenylalanine ammonia-lyase 537 658 - -
Sebi384g00001 702 Gene3D - 23 270 IPR024083 -
Sebi384g00001 702 MobiDBLite consensus disorder prediction 1 34 - -
Sebi384g00001 702 Pfam Aromatic amino acid lyase 71 545 IPR001106 -
Sebi384g00001 702 FunFam Phenylalanine ammonia-lyase 271 619 - -
Sebi384g00001 702 PANTHER HISTIDINE AMMONIA-LYASE 28 702 IPR001106 -
Sebi384g00001 702 SUPERFAMILY L-aspartase-like 33 702 IPR008948 GO:0003824
Sebi384g00001 702 FunFam Phenylalanine ammonia-lyase 24 270 - -
Sebi384g00001 702 Gene3D Fumarase/aspartase (Central domain) 271 702 - -
Sebi384g00001 702 CDD PAL-HAL 69 534 IPR001106 -
Sebi384g00001 702 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 206 222 IPR022313 GO:0016841
Sebi384g00001 702 NCBIfam phenylalanine ammonia-lyase 33 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Sebi384g00001 702 Gene3D - 537 658 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi384g00001 Sebi-Chr384 6240 9214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi384g00001 22 702 Monolignol Biosynthesis Gene Families AT3G53260 83.113 0.0 1197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi384g00001 K10775 - gmx:100787902 1254.58