Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi383g00016 ATGCCAAAATTGTGTCTTGTTTGGTCCTCTGAAGTTGGTCTTGCTAGACCTCTGTGCCATATGAACTATGTCTCTTCCGTTTTGCTATGTGTTCCTGCTATACATAGTAGATCACTGAAAGGCTATTTGCCCTTGTTGAAACTCCCTTGCTATGTATCTTGCCAAATAATTCATGGATCTATTTCCATATTCACATTCTTCTACTCAAGGAAGGTGGAAATGGCTAACACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAACACCTGCAGCTCCTCCATCATCTAGAAATGTTGCAGCCCCACCACCTGTACCTAATGGGTCCACACAATCTTCTGTTAAAACCCGCATATGCAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAGCTTGGCAAGCCTATTGCTCTCTCATTTGATGATCATCGTGCCATGGGACCAACTGCAACAGGTCGTATTGCTAGTCGAATGGAGCCTCCTCCTGGTCCTGCCGCTAGCTTTGGTGCCAATGCCACTGCCAAGATCAGTGTGGAAGCTTCCCTTGCTGGAGCAATCATTGGGAAGGGTGGTGTGAATTCAAAGCAGATCTGTCGCCAAACTGGAGCTAAACTTTCAATTCGAGAGCATGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAGGATTTACTGTTGACCCTGCAAATGTCTGCACCACCTAAAACAGCCCCAGGTGTTCCTGGTGCCCCTGCTCCTCCTGGAAGCAACTATAAGACGAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACTTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGTAAATGA 972 0.4516 MPKLCLVWSSEVGLARPLCHMNYVSSVLLCVPAIHSRSLKGYLPLLKLPCYVSCQIIHGSISIFTFFYSRKVEMANTAGCPFGEGCHFLHYVPGGYNAVAQMMNLTPAAPPSSRNVAAPPPVPNGSTQSSVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKPIALSFDDHRAMGPTATGRIASRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTAPGVPGAPAPPGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi383g00016 323 ProSiteProfiles Type-1 KH domain profile. 199 263 - -
Sebi383g00016 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 293 317 IPR000571 GO:0046872
Sebi383g00016 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 157 IPR000571 GO:0046872
Sebi383g00016 323 SUPERFAMILY CCCH zinc finger 291 322 IPR036855 GO:0046872
Sebi383g00016 323 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Sebi383g00016 323 SMART kh_6 198 268 IPR004087 GO:0003676
Sebi383g00016 323 MobiDBLite consensus disorder prediction 110 129 - -
Sebi383g00016 323 CDD KH-I_AtC3H36_like 202 267 - -
Sebi383g00016 323 SMART c3hfinal6 292 318 IPR000571 GO:0046872
Sebi383g00016 323 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Sebi383g00016 323 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 189 271 IPR036612 GO:0003723
Sebi383g00016 323 FunFam Zinc finger CCCH domain-containing protein 287 323 - -
Sebi383g00016 323 Pfam RNA-binding, Nab2-type zinc finger 80 90 - -
Sebi383g00016 323 PANTHER CCCH ZINC FINGER/TIS11-RELATED 77 176 IPR045877 GO:0003729
Sebi383g00016 323 ProSiteProfiles Zinc finger C3H1-type profile. 292 319 IPR000571 GO:0046872
Sebi383g00016 323 Gene3D K Homology domain, type 1 195 291 IPR036612 GO:0003723
Sebi383g00016 323 FunFam Zinc finger CCCH domain-containing protein 125 162 - -
Sebi383g00016 323 Pfam KH domain 202 264 IPR004088 GO:0003723
Sebi383g00016 323 SUPERFAMILY CCCH zinc finger 129 161 IPR036855 GO:0046872
Sebi383g00016 323 Gene3D - 292 323 - -
Sebi383g00016 323 Gene3D - 124 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi383g00016 Sebi-Chr383 297716 298914 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi383g00016 KH_1 4.2e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi383g00016 - - gmx:100803981 457.988