Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi383g00008 ATGGAGGATTTGAAGAAGAGAAAGCTAGACGAGGCAGCAGAAGGCAACGGTGAATTTGCTTCCAAGGAAGAGCTTCGCTTTCTCATCGAACCTCTTGCTAAACCTCAGCTCGTCGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTTCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAGCAACAGGAAAATCCCGTGGCTATGGATTTATCACATTTAAAAATATGGAATCAACTCAGCACGCATTGAGAGCACCTAGCAAGTTGATTGATGGAAGATTGGCTGTCTGTAATCTAGCTTGTGAGGGCCTAAGTGGAACAAGTAGTTCTCCTGATCTTGCCCTGAGGAAGCTTTACATTGGAAGCTTATCACCAGAAGTCACAACTGAAATGCTGCTTAGCTTTTTTGGGAGGCATGGTGACATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTCGGCTTTGTTACATACAAGACAGCAGAGGCTGCGAAGAAGGCCATAGATGACCCAGAAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCTGATTCCCACAAGGGTAAAACCGGCCAGCCACCATTTCCTGCAGGAGGAGTTCCAGTGGCAGCCTTACCTATGACCCCAGGATATGTTCAGCCTGGAAAAGCTCATATTAATTCCGGTCCCCCGGTTGGTTATGCATACCCCCAAACTGTAGCACCATATCCTGCAGCTCCTTATCCAAGCCCTCCTACTGCACACTCTCCTTATCCAACACAAGGGCAGGTTCCTTATCCTCCAGTTTCTGCCAAGAAAGACCAACTTGGGCTCCCGCCAACTCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCTAAGCAATGA 1017 0.4562 MEDLKKRKLDEAAEGNGEFASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLRAAFEEHGEIEEGAVIYDKATGKSRGYGFITFKNMESTQHALRAPSKLIDGRLAVCNLACEGLSGTSSSPDLALRKLYIGSLSPEVTTEMLLSFFGRHGDIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSHKGKTGQPPFPAGGVPVAALPMTPGYVQPGKAHINSGPPVGYAYPQTVAPYPAAPYPSPPTAHSPYPTQGQVPYPPVSAKKDQLGLPPTQPVGMNNYPYYYPKQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi383g00008 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 227 IPR000504 GO:0003723
Sebi383g00008 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Sebi383g00008 338 PANTHER GEO13361P1-RELATED 49 146 - -
Sebi383g00008 338 FunFam UBP1-associated protein 2C 144 242 - -
Sebi383g00008 338 CDD RRM2_NsCP33_like 158 232 - -
Sebi383g00008 338 SUPERFAMILY RNA-binding domain, RBD 60 143 IPR035979 GO:0003676
Sebi383g00008 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Sebi383g00008 338 Gene3D - 57 143 IPR012677 -
Sebi383g00008 338 MobiDBLite consensus disorder prediction 289 325 - -
Sebi383g00008 338 MobiDBLite consensus disorder prediction 289 306 - -
Sebi383g00008 338 SMART rrm1_1 158 230 IPR000504 GO:0003723
Sebi383g00008 338 SMART rrm1_1 67 139 IPR000504 GO:0003723
Sebi383g00008 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 134 IPR000504 GO:0003723
Sebi383g00008 338 SUPERFAMILY RNA-binding domain, RBD 154 248 IPR035979 GO:0003676
Sebi383g00008 338 FunFam UBP1-associated protein 2C-like 62 143 - -
Sebi383g00008 338 Gene3D - 144 242 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi383g00008 Sebi-Chr383 160296 163665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi383g00008 149 268 C2H2 Transcription Factor Family AT2G19380 32.283 9.52e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi383g00008 K12741 - gmx:100776344 546.584