Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi383g00004 ATGGTTTGCGACTTCCTCCATGTGTATATCAACCTCGTTGTCTTCGCGTCAATTTTGATTTCTCAGGGCTTGGCGTTCACTCTTTCATCTGAAGTCTCAGCTCTCCAGGATCTATACAGGGCCTTAAACTACCCACCGACTCTCCAAGGATGGAATGGTAACGATCCTTGTGAGGAGTCTTGGACAGGAGTTGCTTGTTCTGGGTCATCAGTTATACACCTAAAAATTCGAGGATTAAACCTCACTGGGTGTCTTGGAAGCATGCTCTATAATCTACGTAACTTGAAGCAACTTGATGTCAGTTCTAATAACATAGTGGGCGAAATACCATTCGGCTTACCTCCGAATGTCACACATATGAATTTAAGCCACAATTTCTTAAATGGACCCATTGGTGACGTGATTCAACCAGTACAGAATTGTAGGTTCCTGCAGAATAACAGATTCACTGGATCAGTAGTCTACCTGGCAGAACTTCCACTTACAGATTTGAACATTCAAGACAATCTGTTTAGTGGCCTTCTTCCACACCATTTTCAGTCCATACAAAATTTATGGATTGGAGGGAATAAATTCCATGCAGCAGACAACTCTCCTCCCTGGACTTTTCCTTTAGATACTGTACCAGTTGAGCACAATATTAGTCGCCCACCCACAACTCATGCAACTGCCATCAAGAACTATCCTCCTCCCAAAGTAAGTGAGCACAAGAAGAAACAAATAGGTCCTGGGGGAATAGCTTTTATGGTTGGTGGAGGAACACTAATGGCTACAGGTATGGCACTCTTTGTTGCAATCCGTTTGAGTAAACAGCGACTACAAAGCCTGCACTTCAATAACATAGAAAGCAACCACAGCTCTTTGCATTCTCATCAGACCAGTGCAACCATATCCATAGAGGTCTCTTCTACCGCACTGGATGAGAGCCCACAAATCCCTCCTTTTAATGCCGCATCCCTTTTGGGTCCAATGCGACTTCCTTCTCTGCTCCATACCAATGTAAAGGAATCATCAAGAAGAAGTTTTTCCAAAAGAGGCAGATCCACTGGAGGGACGAAAATTTACACGGTCGCGGAGCTTGAGTTGGCTACCAACTGCTTCAATGAAGGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACAAAGCTGAATTTCCTGATGGCAAAATTTTGGCCGTGAAGAATATAAACATGGCAGGCGTGTCTTACAGAGAAGAGGAGAAGTTCTTGGATTTCATCTGCACGGCTTCCCGACTGAAGCACCCCAACATCGTAGCACTCAATGGTTACTGTTTGGAGCGCGGAAAGCATCTTCTTGTTTACGATTACGTTGGAAATTTAACTCTCAACGATGCTCTTCACAGTGGAGCAAACAAACCTCTATCGTGGGTCCAACGTCTTCGAATCGCTCTAGGTGTTGCTCAGGCTCTGGACTATTTGCACTCAGCATGCTGCCCTCCTGTGGCCCATGGTAACTTGAAGGCTGCCAATGTTCTGCTGGATGAAAATTCGATGCCTCGTGTTTGTGACAGTAGCTTGGGTATTTTGAGACCACTGAGGAGCAATCAAGTTAAAATTCCAGCTACTGAGGGTATCATTAGAGAGAGAGGGTCCGTTGCGCCTGGCCATGGCCTAGCAGGATCCAGCAGCAGAAGGGGAGACGCCTTTGCCTTTGGGGTATTGCTTCTGGAACTGTTAACAGGAAGGAAACCTTTCGATGGTGCCAGGCCAAGGGAGGAGCAATATCTGGTGAAATGGGCTTCACCCAAGCTTAATGATAGCGCGAGTTTGGAACAGATCGTGGATCCTTGTATGAAGAGGACATTTTCATCCAAGGCTCTTTGTCTTTATGCTGGTATCATCTCCCTCTGTATACAGCCTTTAAGGCAATTCCGTCCACCAATGTCTGGAGTTGTGGACTCTCTTGTATCTCTTTCTCAAAAGTTCAACTATACAAAGAGCGGTGTAGCAGATGGCTCTGAATTTGATCTGTTTGAGAGATCGTTCCGTTCAAACAACACATGCTTTATAAGTACACCGGCATTGAGCCATGCATCAGCCTGA 2067 0.4552 MVCDFLHVYINLVVFASILISQGLAFTLSSEVSALQDLYRALNYPPTLQGWNGNDPCEESWTGVACSGSSVIHLKIRGLNLTGCLGSMLYNLRNLKQLDVSSNNIVGEIPFGLPPNVTHMNLSHNFLNGPIGDVIQPVQNCRFLQNNRFTGSVVYLAELPLTDLNIQDNLFSGLLPHHFQSIQNLWIGGNKFHAADNSPPWTFPLDTVPVEHNISRPPTTHATAIKNYPPPKVSEHKKKQIGPGGIAFMVGGGTLMATGMALFVAIRLSKQRLQSLHFNNIESNHSSLHSHQTSATISIEVSSTALDESPQIPPFNAASLLGPMRLPSLLHTNVKESSRRSFSKRGRSTGGTKIYTVAELELATNCFNEGNLLGEGSLGPVYKAEFPDGKILAVKNINMAGVSYREEEKFLDFICTASRLKHPNIVALNGYCLERGKHLLVYDYVGNLTLNDALHSGANKPLSWVQRLRIALGVAQALDYLHSACCPPVAHGNLKAANVLLDENSMPRVCDSSLGILRPLRSNQVKIPATEGIIRERGSVAPGHGLAGSSSRRGDAFAFGVLLLELLTGRKPFDGARPREEQYLVKWASPKLNDSASLEQIVDPCMKRTFSSKALCLYAGIISLCIQPLRQFRPPMSGVVDSLVSLSQKFNYTKSGVADGSEFDLFERSFRSNNTCFISTPALSHASA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi383g00004 688 FunFam Leucine-rich repeat receptor-like protein kinase 445 654 - -
Sebi383g00004 688 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 332 444 - -
Sebi383g00004 688 Gene3D Ribonuclease Inhibitor 27 202 IPR032675 -
Sebi383g00004 688 SUPERFAMILY Protein kinase-like (PK-like) 342 643 IPR011009 -
Sebi383g00004 688 MobiDBLite consensus disorder prediction 215 239 - -
Sebi383g00004 688 Pfam Protein tyrosine and serine/threonine kinase 370 608 IPR001245 GO:0004672|GO:0006468
Sebi383g00004 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 143 - -
Sebi383g00004 688 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 647 IPR046959 -
Sebi383g00004 688 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Sebi383g00004 688 Gene3D Transferase(Phosphotransferase) domain 1 446 664 - -
Sebi383g00004 688 Gene3D Phosphorylase Kinase; domain 1 330 444 - -
Sebi383g00004 688 SUPERFAMILY L domain-like 29 194 - -
Sebi383g00004 688 ProSiteProfiles Protein kinase domain profile. 367 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi383g00004 Sebi-Chr383 118145 123875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi383g00004 9 688 Strubbelig Receptor Gene Family AT5G06820 47.361 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Sebi383g00004 PK_Tyr_Ser-Thr 3.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi383g00004 - - gmx:100775254 968.378