Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi382g00025 ATGGAGTTTTGCATTATGATTGCCCAACATCAACATGTCAGTGGAAATGCCAGAAAACGTCCATTTGAGTATGTTGACAACATATCCTTGTGGAAAATGATGAAAAAGAAATCAAAAAGCAAGATCACATTCTTGGAACCGAAATGGAATCATGTAGTAGAAGAAGCTTCAGAGACAACCCCTCAACAAAACTTGTATGTGCCTATGAGGAGAAATCAGAAGCTTAGTGATAAAGTAACAACTCTACAAAAGTTGGTTTCACCTTTTGGCAAGACTGACACTGCCTCAGTTCTTCATGAGGCTTCTCTTCATATCAAACTTCTTCAAGCACAAATCCAG 339 0.3835 MEFCIMIAQHQHVSGNARKRPFEYVDNISLWKMMKKKSKSKITFLEPKWNHVVEEASETTPQQNLYVPMRRNQKLSDKVTTLQKLVSPFGKTDTASVLHEASLHIKLLQAQIQ 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi382g00025 113 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 113 IPR036638 GO:0046983
Sebi382g00025 113 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 108 IPR011598 GO:0046983
Sebi382g00025 113 CDD bHLH_AtbHLH_like 70 113 IPR045239 -
Sebi382g00025 113 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi382g00025 Sebi-Chr382 1028318 1029425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi382g00025 71 112 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21340 69.048 1.67e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi382g00025 - - ccaj:109812405 139.428