Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi382g00022 ATGGGCTATCTCTCCTGCAACGCCGAAGAGTTCTCTTACTCGGAACTCCTCGCCGCCACTAACGGCTTCTCCTCCGACACCTTCTTAGGCAAAGGCAGCCACGGCAGCGTCTACAAAGCCACCCTCGACGGCGGCAGCCTCATCGCCGCCGTCAAGAGTACAAAACGCCACCACACCGCCGCAGACAACGAGATCGAGATCCTCTCTCGCGTCGCAAACCCTCGCCGCTTCGTCAACCTCATTGGCTTCTCCACTGACCACGCCATCAACAACAACAACAAGCTAATAGTCGTTGAATACATGCCTAACGGCTTCGCTCTACGACCTCCTTCACTCGAACCCGTTTCGGCCGCCCGGTTGGACTCAACGCGTCCGGTTCGCGCTACAAATCGCGAAGGCGGTTCACGCACTTCATTCTCTGGACCCGCCGGTGATCCACCGCGACATCAAATCCTCCAACGTTCTCATCGACGATCGCTGGAACGCGAGGCTTGGCGATTTCGGTCTTGCACTCAGGGGACACGTGGAGGACGCTCGCGTGAAATGTACTCCACCGGCTGGAACGCTAGTCCGCCGTCGGTGTTGGACTGGGCGGTGCCGTTGATAAGGCGAGGCGAGGTCGCCGGAATCTGTGACCCGAGGATTGGTTCGCCGCTGGATGAGGCAGCGATACGGAAGTTAGCGGTGCTTGCGGCGAGGTGCGTGAGGTCGACGGCGGAGAAGCGGCCTTCGATGGCGGAGGTTGTGGAGTGCGTTAAGGCGGTGAGGAAGAGAATTCACGCGCCGGCGATATGGAACAGAATGAAGAGACGCGTGGAAGCGCGCGTGGGAGACCGTTGGTTATTGATTGTGACAGGAGTGAAGAATTTGTGA 873 0.5888 MGYLSCNAEEFSYSELLAATNGFSSDTFLGKGSHGSVYKATLDGGSLIAAVKSTKRHHTAADNEIEILSRVANPRRFVNLIGFSTDHAINNNNKLIVVEYMPNGFALRPPSLEPVSAARLDSTRPVRATNREGGSRTSFSGPAGDPPRHQILQRSHRRSLEREAWRFRSCTQGTRGGRSREMYSTGWNASPPSVLDWAVPLIRRGEVAGICDPRIGSPLDEAAIRKLAVLAARCVRSTAEKRPSMAEVVECVKAVRKRIHAPAIWNRMKRRVEARVGDRWLLIVTGVKNL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi382g00022 290 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 7 104 IPR044815 GO:0004674
Sebi382g00022 290 Gene3D Phosphorylase Kinase; domain 1 3 100 - -
Sebi382g00022 290 Pfam Protein tyrosine and serine/threonine kinase 27 104 IPR001245 GO:0004672|GO:0006468
Sebi382g00022 290 SMART tyrkin_6 23 252 IPR020635 GO:0004713|GO:0006468
Sebi382g00022 290 MobiDBLite consensus disorder prediction 116 160 - -
Sebi382g00022 290 SUPERFAMILY Protein kinase-like (PK-like) 8 104 IPR011009 -
Sebi382g00022 290 Gene3D Transferase(Phosphotransferase) domain 1 179 272 - -
Sebi382g00022 290 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi382g00022 Sebi-Chr382 935822 936901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi382g00022 10 249 Receptor kinase-like Gene Family AT5G47850 27.597 3.80e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Sebi382g00022 PK_Tyr_Ser-Thr 3.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi382g00022 - - ahf:112706221 220.705