Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi381g00045 ATGGCGTCCAGCCCCCGCACCGTCGAAGAGATCTTCAAGGACTTCAGCGCTCGAAGAGAAGCCATCGTTCGTGCTTTATCTCAAGATGTTGATGAATTCTATGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGGCATTCAAATGAAACATGGGAAGTGACTCTGCCAGCAGAGGAGGTTCCACCAGAGCTTCCAGAGCCGGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTGCCTACTGTTTTTGAAGTTGTAACTGAGAGGAAGCCAATAAAGGACAAGCCTACTGCAGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTCGCAGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCGGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGCGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCATGAGGCGGGGCAGGCCCTAG 711 0.4754 MASSPRTVEEIFKDFSARREAIVRALSQDVDEFYGLCDPDKENLCLYGHSNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRGRP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi381g00045 236 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Sebi381g00045 236 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Sebi381g00045 236 CDD PHD_AL_plant 183 233 IPR044104 -
Sebi381g00045 236 FunFam PHD finger alfin-like protein 176 232 - -
Sebi381g00045 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Sebi381g00045 236 Pfam PHD-finger 184 232 IPR019787 -
Sebi381g00045 236 SMART PHD_3 183 231 IPR001965 -
Sebi381g00045 236 SUPERFAMILY FYVE/PHD zinc finger 172 234 IPR011011 -
Sebi381g00045 236 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Sebi381g00045 236 MobiDBLite consensus disorder prediction 146 163 - -
Sebi381g00045 236 PANTHER CPG BINDING PROTEIN 4 232 IPR045104 GO:0006355|GO:0042393
Sebi381g00045 236 MobiDBLite consensus disorder prediction 137 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi381g00045 Sebi-Chr381 740135 743064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi381g00045 2 235 Alfin-like Transcription Factor Family AT5G05610 77.966 8.02e-120 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sebi381g00045 Alfin 2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi381g00045 K26274 - gmx:100793126 453.751