Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi380g00060 GGTTTATTGAAATGTGGAGGGACACCAATGGAACCCTCTGAATCCGAATCAATTGGTTCCTCCATCAAAGACCCACAATTGGGTTCTCAGGGTGAAACTTTTCCCCACCACGATCACGATCCTCAAGCCTCAGATCTCAATAACCATGCCCTGGTTGATGATGCACTTGGCGGGGAGCTCCAGAACAAGTTGGATTTGAAAGATGGGGATGAAACTGAGAATGAAGTTTCAAACTTTGAAGCTGATGATGAACAATTGTGTGGTGAAGCTGCTGCCCCAGAACCTGACAAGGGCCAAAGTGGAATGGCTGGATTTGAAGAACTGGCTGTTAAAGAGAATGAAGGAGAAAGAGATGAACTGGAGGAAAAATTAGGCCAGACAGAATGCAAGTATTATTTAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGTATTCAAGTTCAACAGCCCCGGCTTCAGAGCTTAACTTCCTCGGTCTACCTATTCGTTTGGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGCTGTTGGAGTATGTGATTCCCCTTCAGGGTATGGTAATGGCAGTTCTATTCCATTACAAGGTGTATCACAATCATCTATACCCTCATGGTCTTCTACTAGGACATTAAATGAGACTGCTCCCTTTATGCCAATGATACTTTCGCCGACTCTAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAG 792 0.4419 GLLKCGGTPMEPSESESIGSSIKDPQLGSQGETFPHHDHDPQASDLNNHALVDDALGGELQNKLDLKDGDETENEVSNFEADDEQLCGEAAAPEPDKGQSGMAGFEELAVKENEGERDELEEKLGQTECKYYLRSGGCKFGKACKFNHTRGKYSSSTAPASELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGVCDSPSGYGNGSSIPLQGVSQSSIPSWSSTRTLNETAPFMPMILSPTLGVSPQSSEWNGYQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi380g00060 264 PANTHER PROTEIN PHOSPHATASE RELATED 95 264 - -
Sebi380g00060 264 ProSiteProfiles Zinc finger C3H1-type profile. 123 151 IPR000571 GO:0046872
Sebi380g00060 264 SMART c3hfinal6 171 198 IPR000571 GO:0046872
Sebi380g00060 264 SMART c3hfinal6 123 150 IPR000571 GO:0046872
Sebi380g00060 264 MobiDBLite consensus disorder prediction 1 48 - -
Sebi380g00060 264 MobiDBLite consensus disorder prediction 13 28 - -
Sebi380g00060 264 SUPERFAMILY CCCH zinc finger 172 198 IPR036855 GO:0046872
Sebi380g00060 264 Coils Coil 110 130 - -
Sebi380g00060 264 MobiDBLite consensus disorder prediction 61 100 - -
Sebi380g00060 264 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 148 IPR000571 GO:0046872
Sebi380g00060 264 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 174 197 IPR000571 GO:0046872
Sebi380g00060 264 SUPERFAMILY CCCH zinc finger 126 153 IPR036855 GO:0046872
Sebi380g00060 264 Gene3D - 113 202 - -
Sebi380g00060 264 ProSiteProfiles Zinc finger C3H1-type profile. 171 199 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi380g00060 117 232 C3H Transcription Factor Family AT1G04990 40.458 1.21e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi380g00060 zf-CCCH 2.4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi380g00060 - - gmx:100809906 268.855