Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi380g00059 GCGCCTGTCTATTTATCTGAGAGGAGTATACATTCACCTTCATCATATGTCATGAACAACCCTGCTATTGAAAGAAATGTTTATATGCACCATAAAAAGCAAATGCCGGTTGACGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAATGTGTGCACACATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCGCCACCATCAACTAAGCCTGGACTTGATCAACAATCCTCCTACACAAACTCAGCTATTGTTGAGGTGGCTGGGATGGGTGGAAGTGGAGGTGCCAGTGATGTGACAATTCAGCAGCCTGTGTAA 477 0.4361 APVYLSERSIHSPSSYVMNNPAIERNVYMHHKKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVTRLPPCNLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPPPSTKPGLDQQSSYTNSAIVEVAGMGGSGGASDVTIQQPV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi380g00059 158 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Sebi380g00059 158 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 115 IPR000571 GO:0046872
Sebi380g00059 158 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Sebi380g00059 158 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Sebi380g00059 158 SUPERFAMILY CCCH zinc finger 48 73 IPR036855 GO:0046872
Sebi380g00059 158 PANTHER PROTEIN PHOSPHATASE RELATED 10 123 - -
Sebi380g00059 158 SUPERFAMILY CCCH zinc finger 87 115 IPR036855 GO:0046872
Sebi380g00059 158 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Sebi380g00059 158 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Sebi380g00059 158 Gene3D - 24 82 - -
Sebi380g00059 158 Gene3D - 89 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi380g00059 Sebi-Chr380 1015606 1017132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi380g00059 39 141 C2H2 Transcription Factor Family AT3G02830 44.660 2.86e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi380g00059 zf-CCCH 4.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi380g00059 - - gmx:100786894 281.567