Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi380g00050 ATGGCGGCTGCAGCGGTGAAGGCACCACGGCCGGGCAAGGGAGGGTTCGAGGGCCATGGTCTGAGCGAAGAGGAAGCACGAGTGCGAGCCATTGCGGAGATCGTGAACTCCATGGTCGACCTCTCTCGGAAAGGGCAGAATGTCGATCTTAACGCGCTCAAGTCCGCGGCGTGCCGCAAATACGGCTTGGCTCGTGCGCCGAAGCTGGTGGAGATGATCGCCGCTCTCCCCGACTCCGAACGAGAGGCCCTCCTTCCCAAGCTCCGAGCCAAGCCCGTCCGAACCGCCTCCGGAATAGCGGTGGTGGCCGTCATGTCGAAGCCCCACCGATGCCCTCACATCGCAACCACCGGCAACATATGCGTCTACTGCCCCGGTGGTCCTGACTCTGACTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACTAGTATGCGTGCAATTCGAGCAAGGTATAACCCGTATGTCCAGGCAAGGAGTAGGATTGATCAGCTTAAGCGTTTGGGGCACAGTGTAGACAAGGTTGAGTTCATCTTAATGGGTGGCACTTTCATGTCCCTTCCGGCGGATTACCGTGATTACTTCATAAGGAATCTTCATGATGCTTTGTCTGGACACACGTCTGCCAATGTAGAAGAGGCAGTGGCGTACTCTGAGCATAGTGCTACCAAGTGTATTGGCATGACAATAGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGACAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGTGACACTAATAGAGGACATACTGTAGCTGCTGTAGCTGATTGTTTTTGTTTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCAGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATACGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCACCTGAACAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCCCCATGGACACGTGTTTATAGAGTTCAACGGGATATTCCCATGCCTCTAGTTACCTCGGGGGTTGAGAAAGGGAATCTGAGGGAGCTAGCATTAGCTCGAATGGAAGACCTAGGATTAAAATGCCGTGATGTTCGGACCAGAGAAGCTGGTATCCAGGATATTCATCACCAAATTAAGCCTGAAGAGGTGGAACTTGTTCGTCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTGTCATATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTGCGATTGCGAAAATGTGGCCGGAACACTACTTGTCCAGAGCTTATGGGAAAGTGTTCTATTGTTCGTGAACTCCACGTTTATGGAACTGCTGTACCAGTTCATGGGCGTGATGCTGACAAGCTACAACACCAGGGTTATGGTACACTTCTCATGGAGGAGGCAGAGCGTATTGCTTGCAGAGAACACAGATCAACCAAAATAGCTGTAATTTCAGGGGTTGGCACACGCCATTATTACAGAAAACTGGGATATGAACTTGAAGGGCCTTACATGGTCAAATATCTAATGTAA 1680 0.4911 MAAAAVKAPRPGKGGFEGHGLSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPDSEREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLM 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi380g00050 559 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 46 558 IPR034687 -
Sebi380g00050 559 MobiDBLite consensus disorder prediction 1 20 - -
Sebi380g00050 559 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 18 558 IPR039661 -
Sebi380g00050 559 SUPERFAMILY Radical SAM enzymes 131 370 - -
Sebi380g00050 559 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 408 559 IPR000182 GO:0016747
Sebi380g00050 559 Gene3D - 410 559 - -
Sebi380g00050 559 PIRSF HAT_Elp3 17 559 IPR034687 -
Sebi380g00050 559 Pfam Radical SAM superfamily 119 307 IPR007197 GO:0003824|GO:0051536
Sebi380g00050 559 SMART MiaB 101 363 IPR006638 GO:0003824|GO:0051536
Sebi380g00050 559 ProSiteProfiles Radical SAM core domain profile. 94 384 IPR007197 GO:0003824|GO:0051536
Sebi380g00050 559 CDD Radical_SAM 108 355 - -
Sebi380g00050 559 Pfam Radical_SAM C-terminal domain 325 404 IPR032432 -
Sebi380g00050 559 FunFam Elongator complex protein 3 407 559 - -
Sebi380g00050 559 SFLD elongater protein-like 49 558 - -
Sebi380g00050 559 SFLD ELP3-like 49 558 IPR034687 -
Sebi380g00050 559 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 367 554 IPR016181 -
Sebi380g00050 559 Pfam Acetyltransferase (GNAT) family 411 547 IPR000182 GO:0016747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Sebi380g00050 Radical_SAM 1.9e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi380g00050 K07739 - gmx:100818764 1108.2