Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi380g00028 ATGGAAGATTCTGTTCAACGCAAGATGGAGCAATTTTACGAAGGATCCGATGGACCACCCTTACGCGTTCTCCCTATTGGTGGTTTGGGTGAAATTGGAATGAATTGCATGCTTGTAGGAAACTATGACCGCTATATCCTCATTGATGCCGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTACAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCACTTGTTATAACACATGGTCATGAGGATCATATCGGTGCGTTGCCTTGGGTCATCCCGGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCCAGACTCAAAGTATTTAGAACTAGGAAGAAGTTTCTGGCTGGGCCATTTGAGATAGAACCTATCACGGTGACCCATTCCATTCCTGATTGTTGCGGACTAGTTCTTCGCTGCTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTGGATGGGAAGGTTTTTGATCGTGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACACTGATGATGAGTGATTCAACAAATGTACTCTCTCCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCACTATTGAGGCACATTTCAGCTTCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACATAGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCATTTGATCCATCCACACTGGTGAAAGCAGAGGATATTGATTCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCTTTGAATCTTGCATCTTATGGAAGTAGTCACGCTTTCAAACTAACCAAGGATGATATTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCAGAAATTGGATCAACAATAGTTATGGGGAAAAATGAAGGTTTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTCCCCATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCCGTTATTAAGAATGGAGAAATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGTGACAAAGCATTTGGTACATCAAGCGAACTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATTGTGATTAGTATGGAAATCTTTCGCCCTACAAATTTAGACAGTTTGGCTGAAAACACCATAAAAGGGAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGATGGATGCACTATATAAAGCCGCCCATGCCACTCTTTTAAGCTGTCCTGTTAACAGTCCACTGGCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCTGTAGAAAACCCTGCAGCTGGTCTTGGTAATGAGATAAACACAAAATTGTCCGGAAAATCCGATGTGGCTCCTGTAATATCAACATTAAGAAAAGCAGTGGATGGACATGGAAAGGAAAATCAGTCCACCACACTGCACAGTAGAGATGATGGAATTAATATTCAAGGATTACCTGAGGAAGACACCACTTTAAGTGGAGCTGAGGGTGATTTATCTGATTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTGCATCATCTGTTGAGAAGTCAATCAAAGCTAATAATGGTCATGTTTCACAAAAGGAGCATAAGTCCAATCTAAAGAAAGATGATTCTGAAGACACCAGTGAAGCCAAGTCTGGAGAAATGCCTGATTCCAATCATCCGTCTTCAAAATCAGTAAAGAAAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTAGTATGCGGGGGGAACTACATGACAGATTTCAAGTTGTTAAGGGAAGGATGGCTCTCTGGGAAGAGATATCTCAAAACTTGTTGGCTGATGGGATTAACAGAAGTCCTGGACAGTGCAAATCTCTTTGGACATCTTTGGTACTGAAATATGAGGAGATCAAGAATGAGATGGGAAGCAAGAAAAGTTGGCAATATCTTGAGGACATGGAAAGGATAATGCCCAATGAGGAAACACCGGCAACAAAGTGA 2430 0.4086 MEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFLAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSTLVKAEDIDSYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKDDIVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLKIALDGIIVISMEIFRPTNLDSLAENTIKGKIRITTRCLWLDKGKLMDALYKAAHATLLSCPVNSPLAHMERTVSEVLRKMVRKYSGKRPEVIAIAVENPAAGLGNEINTKLSGKSDVAPVISTLRKAVDGHGKENQSTTLHSRDDGINIQGLPEEDTTLSGAEGDLSDSEDSDEFWKPFIASSVEKSIKANNGHVSQKEHKSNLKKDDSEDTSEAKSGEMPDSNHPSSKSVKKNKWKAEEVKKLISMRGELHDRFQVVKGRMALWEEISQNLLADGINRSPGQCKSLWTSLVLKYEEIKNEMGSKKSWQYLEDMERIMPNEETPATK 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi380g00028 809 CDD GT1 716 781 - -
Sebi380g00028 809 Gene3D - 222 372 IPR042173 -
Sebi380g00028 809 SUPERFAMILY Metallo-hydrolase/oxidoreductase 21 435 IPR036866 -
Sebi380g00028 809 MobiDBLite consensus disorder prediction 672 717 - -
Sebi380g00028 809 Pfam Beta-lactamase superfamily domain 44 180 IPR001279 -
Sebi380g00028 809 MobiDBLite consensus disorder prediction 674 700 - -
Sebi380g00028 809 Gene3D - 25 437 IPR036866 -
Sebi380g00028 809 SMART Lactamase_B_5a 33 230 IPR001279 -
Sebi380g00028 809 Gene3D - 718 779 - -
Sebi380g00028 809 MobiDBLite consensus disorder prediction 609 654 - -
Sebi380g00028 809 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 378 415 IPR011108 -
Sebi380g00028 809 ProSiteProfiles Myb-like domain profile. 710 774 IPR001005 -
Sebi380g00028 809 Pfam Myb/SANT-like DNA-binding domain 716 799 IPR044822 -
Sebi380g00028 809 PANTHER RIBONUCLEASE J 1 809 - -
Sebi380g00028 809 CDD RNaseJ_MBL-fold 24 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi380g00028 Sebi-Chr380 441522 451057 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi380g00028 717 800 Trihelix Transcription Factor Family AT2G38250 34.884 1.19e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sebi380g00028 Lactamase_B_2 1.4e-09 CL0381