Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi37g00068 ATGGAGGGACATGGTGATATGGGTCTAATTGGAGAGAACTTTGATTCTGGTTTGATGGGAAGAATCAGAGATGATGAGTATGAAAGCAGTTTCTTTAAGGAGTCTCCTCATCCTGATGAGAAGCAAAGATCAGATCTCAGTAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAACAGAAGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAATGACAAGCTCAGAGCTGAGAACAGTGTGATGAAGGAAGCTTTGGCAAATCCAATGTGTAACAGCTGTGGTGGACCAGCAATTCCTGGCCAAATTTCATTGGAGGAGCACCAAATTAGAATTGAAAATGCTCGATTAAAGGATGAATTGAACAGGATTTGTGCCTTGGCAAACAGGTTCTTGGGTAGGCCACTTTCATCCTTGGCCAGTCCCATGCCTCTGCCAACCCCAAATTCTGGTCTTGAACTTGGTATTGGAAGAAATGGGGCTGGTGGTTCAGGCAATTTTAGCATGTCCTTGCCAATGGGACTTGAGGTTGGAGATGGTGTTATGGGCACTCCACCACCTACACTACCTGGGATTAGATCATCAATGGGGTTGATTGGAAATGAAGTCCAGCTTGAGAGATCTATGCTAATAGATGTTGCAGTAGCTGCTATGGATGAATTGATTAAGATGACTCAGCCAGATAGCCCTCTTTGGATTAGGAGTTCAGATGGAAGCAGGGAAGTGCTGAACCATGAGGAGTATTCAAGGGTGTGTTCTTATATCAGGCCAAAACCCACTGGTTATGTAACTGAAGCTACTAGGGAAACTGGGTTAGTGATAATCAACAGTTTGGCCCTTGTGGACCTATTGATGGATGCGGATCGATGGTCAGAGATGTTTCCATCTATGATTGCTAGAGCTGTCACTTTGGATGTAATTTCTAGTGGAATGGGTGGAACCAGAAATGGAGCTTTACAAGTGATGCATGCTGAGGTTCAATTGCCTTCTCCACTAGTCCCTGTTCGTCAATTGAGTTTCCTCAGGTTCTGCAAGCAGCATGCAGAAGGTGTTTGGGCTGTGGTTGATGTTTCAGTTGACATTGGTCATAATGCTACAAATGGAATCCAATTCATGAACTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAAGATATGCCCAATGGTTTCTCCAAGATTACTTGGGTTGATCACTCCCAGTATGATGAGAGTGTTGTCCACCAACTCTATCGCCCATTGGTTAATTCTGGCATTGGATTTGGTGCTCATAGATGGATTGCAACTCTCCAAAGGCAATGTGAATGCTTTGCAATCCTCATGTCCCCTTCCATACAACCTGAGGACCCCACAGCCATAAGCCAAGCTGGTAAGAGAAGCATTATGAAGCTTGCACAACGCATGACTGATTACTTCTGGTCTGGGATTTGTGTTTCATCGGCTTGCAAGTGGGACATCATTCACATTGGTGGTAACAATGACATGAGAATCATGTCTAGGAAACATGTGGATGAAAATGGTGAGTCTCAGGGCATTGTGCTGAGTGCTGCAACTTCTATATGGATACCAGTGTCAAGGCAGAGGGTGTTTGATTTCTTGCGTGATGGAAGGCTTAGAGGTGAGTGGGATGTCTTGTCTAGTGGTGGATCAATGCAGGAGATGTTCCATATTCCTAAAGCACAAGGACAAGGAAATTGTGTCTCTATCCTTCGTGCTAATAATGCTGCTAATGGGAACGAGAGCAATGTGCTATATCTGCAAGATTCATGGACTGATGTCTCTGGCTCGATGATTGTGTATTCACCAATGACTATGCAATCCTTGAACTTGGTGATGGCTGTTGGGTTACAAATGCTGCTGAGTAACCTCCCAACAGCTAAGCTGACAATGGAGTCAGTTGAAACTGTTAATGGCCTCATCTCATGCACCATTCAGAAGATCAAAGATGCACTTGGAGTTGCATGA 1998 0.4459 MEGHGDMGLIGENFDSGLMGRIRDDEYESSFFKESPHPDEKQRSDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENDKLRAENSVMKEALANPMCNSCGGPAIPGQISLEEHQIRIENARLKDELNRICALANRFLGRPLSSLASPMPLPTPNSGLELGIGRNGAGGSGNFSMSLPMGLEVGDGVMGTPPPTLPGIRSSMGLIGNEVQLERSMLIDVAVAAMDELIKMTQPDSPLWIRSSDGSREVLNHEEYSRVCSYIRPKPTGYVTEATRETGLVIINSLALVDLLMDADRWSEMFPSMIARAVTLDVISSGMGGTRNGALQVMHAEVQLPSPLVPVRQLSFLRFCKQHAEGVWAVVDVSVDIGHNATNGIQFMNCRRLPSGCVVQDMPNGFSKITWVDHSQYDESVVHQLYRPLVNSGIGFGAHRWIATLQRQCECFAILMSPSIQPEDPTAISQAGKRSIMKLAQRMTDYFWSGICVSSACKWDIIHIGGNNDMRIMSRKHVDENGESQGIVLSAATSIWIPVSRQRVFDFLRDGRLRGEWDVLSSGGSMQEMFHIPKAQGQGNCVSILRANNAANGNESNVLYLQDSWTDVSGSMIVYSPMTMQSLNLVMAVGLQMLLSNLPTAKLTMESVETVNGLISCTIQKIKDALGVA 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi37g00068 665 FunFam Homeobox-leucine zipper protein GLABRA 2 224 446 - -
Sebi37g00068 665 Coils Coil 65 100 - -
Sebi37g00068 665 ProSiteProfiles START domain profile. 215 450 IPR002913 GO:0008289
Sebi37g00068 665 SMART START_1 224 447 IPR002913 GO:0008289
Sebi37g00068 665 Pfam Homeodomain 31 69 IPR001356 GO:0003677
Sebi37g00068 665 SUPERFAMILY Homeodomain-like 30 74 IPR009057 -
Sebi37g00068 665 SUPERFAMILY Bet v1-like 217 448 - -
Sebi37g00068 665 CDD homeodomain 30 71 IPR001356 GO:0003677
Sebi37g00068 665 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 662 IPR042160 -
Sebi37g00068 665 SMART HOX_1 19 75 IPR001356 GO:0003677
Sebi37g00068 665 SUPERFAMILY Bet v1-like 467 620 - -
Sebi37g00068 665 CDD START_ArGLABRA2_like 219 446 - -
Sebi37g00068 665 Gene3D - 26 87 - -
Sebi37g00068 665 ProSitePatterns 'Homeobox' domain signature. 46 69 IPR017970 GO:0000981|GO:0006355
Sebi37g00068 665 ProSiteProfiles 'Homeobox' domain profile. 32 71 IPR001356 GO:0003677
Sebi37g00068 665 Pfam START domain 225 447 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi37g00068 Sebi-Chr37 2565955 2569950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi37g00068 30 662 Homeobox Transcription Factor Family AT3G61150 51.793 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi37g00068 START 9.7e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi37g00068 K09338 - gmx:100794400 970.689