Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi379g00016 ATGGCTGGTAGAGGCACTTTTGCAGAGATCATAGATGGTGAAGTTTTCAAATTCTACGCAGATGGCCAGTGGAACAAATCCAACTCTGCAAAATCTGTTCCCATCATCAATCCCACCACCAGGAAGACCCACTTCAAGGTTCAAGCTTGTACCCAGGAAGAGGTTAACAGGGTCATAGAATCAGCAAAAACAGCTCAAAAATCGTGGGCCAAGACTCCACTGTGGAAAAGAGCAGAGTTGCTTCACAAGGCTGCAGCAATACTGAAGGAGCACAAAGTACCCATTGCCGAGTGCCTTGTTAAGGAGATTGCAAAGCCAGCTAAAGATGCTGTCACTGAAGTTGTCAGATCAGGGGATTTGGTTTCATATTGTGCTGAGGAAGGGGTGAGAATTCTTGGGGAAGGAAAATTCCTGGTCTCTGATAGTTTTCCAGGCAATGAAAGAACCAAATACTGTCTCACTTCCAAGATTCCACTTGGAGTTGTCTTAGCTATTCCACCATTTAACTACCCTGTTAATCTGGCTGTTTCAAAGATTGCTCCAGCACTTATTGCTGGAAACTCCATTGTGCTTAAACCCCCAACTCAGGGTGCTGTTGCTGCACTGCATATGGTGCATTGCTTTCATTTGGCTGGCTTCCCCAAAGGTCTTATTAGCTGTGTGACAGGAAAGGGTTCTGAGATTGGTGACTTTCTTACAATGCATCCGGGGGTGAACTGCATAAGTTTCACGGGTGGGGACACTGGAATAGCAATCTCAAAGAAGGCTGGAATGATTCCTCTTCAAATGGAGCTGGGTGGAAAAGATGCTTGCATTGTTCTTGAGGATGCTGACTTGGATTTGGCAGCTGCTAACATTGTAAAAGGAGGCTTCTCCTACAGTGGTCAAAGGTGCACAGCTGTAAAGGTTGCTTTGGTCATGGAATCAATTGCTGACACACTTGTTAAGAAAATAAATGATAAAGTTGCAAAATTAACTGTTGGGCCTCCGGAGGATGACAGTGATATCACACCAGTTGTCACAGAGTCCTCTGCTAACTTTATTGAAGGGTTGGTAATGGATGCTAAGAAGAAAGGAGCAACATTCTGCCAGGAATACAAAAGGGAAGGAAATCTCATATGGCCGTTGCTGTTGGATAATGTTCGTCCAGATATGAGAATAGCATGGGAGGAGCCCTTTGGACCAGTTTTGCCAGTTATCAGAATAAATTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAATTTTGGCCTTCAGGGATGTGTCTTTACAAGAGATATAAACAAAGCAATGCTGATAAGTGATGCAATGGAGACAGGAACAGTTCAAATTAATTCAGCACCAGCTCGTGGACCTGATCACTTTCCTTTTCAGGGTCTGAAGGATAGTGGAATTGGTTCTCAAGGAATCACCAACAGTATTAACATGATGACGAAGGTTAAGACCACAGTAATCAACTTACCAGCCCCTTCTTACACTATGGGCTGA 1491 0.44 MAGRGTFAEIIDGEVFKFYADGQWNKSNSAKSVPIINPTTRKTHFKVQACTQEEVNRVIESAKTAQKSWAKTPLWKRAELLHKAAAILKEHKVPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESIADTLVKKINDKVAKLTVGPPEDDSDITPVVTESSANFIEGLVMDAKKKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAMLISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKVKTTVINLPAPSYTMG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi379g00016 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Sebi379g00016 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Sebi379g00016 496 PANTHER ALDEHYDE DEHYDROGENASE 2 495 - -
Sebi379g00016 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 282 - -
Sebi379g00016 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Sebi379g00016 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Sebi379g00016 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Sebi379g00016 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Sebi379g00016 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Sebi379g00016 496 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi379g00016 Sebi-Chr379 564427 569301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi379g00016 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.105 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi379g00016 K00131 - gmx:100789108 951.814