Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi378g00013 ATGTCAAGTACTCTTGCAGCAATATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATAGCTATAATACTTCTATGGTTCTGTCTTTCTCGCCAGAGGAGTGTTTCTAGGACTTCAGAGACTGGATCCTCTGATCCTTCCCAAGTGGGAAGACATGGTGCAATTGAATTGCCAATTCGAGATACTAGGCGTTTTGAGATGGAAGAACTTTCTTTGGCAACAAATAATTTCAGTGACAAAAATTTGATTGGACATGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAGCGCCATGGACTCCCTACTCAGGAATTTGTTGATGAGGTACGCTATCTCTCATCTATTCACCATCGGAATCTCGTGTCTCTCTTAGGCTACTGCCAGGAAAACAATCTACAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTGCACTCACTTGTATTCATTTTTGTATGCCGCTGGTCGACAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTCCACTCTTTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACAGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTCGCAGATGCAGGACTTCATAATTTCTTGGGGAGAAATGACATTGAGGGCTCATCTTCTCAATGTGTGCTACCAGATGAGATATTCCTTGCACCTGAGGTGAGAGAGTTCAGACAATTTTCTGAAAAGAGTGATGTATACAGCTTTGGTGTATTTTTGCTGGAATTGTTGAGTGGAAAGGAAGCAACATATACACCCTTTCCAGACACTGCGCTAGATCTGGTTGAATGGGTGCTAAGTAATCCAGTCCATGTCATTTTGTCCGACCTCATTGATGAAAGATTGGAGAGGAGTAGTTTCACAGATGAAGTAATGGAAGATTTCATCGTGCTGGGGATCAGATGTATAAATCCTTCAAGTGAAGGACGACCTGCCATGAGCTATGTGGAAATGGAACTTGATCGGATCATAGATAAAGAGATGAACTTGACAACAATTATGGGTGAAGGAACCCCAACTGTGACTCTTGGAAGTCAGTTATTCAAAGCAAAATAA 1146 0.4206 MSSTLAAILGGAAGAVALVGIAIILLWFCLSRQRSVSRTSETGSSDPSQVGRHGAIELPIRDTRRFEMEELSLATNNFSDKNLIGHGKFGEVYKGLLQDGMLVAIKKRHGLPTQEFVDEVRYLSSIHHRNLVSLLGYCQENNLQFLIYEYVPNGSVCTHLYSFLYAAGRQKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLHNFLGRNDIEGSSSQCVLPDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEATYTPFPDTALDLVEWVLSNPVHVILSDLIDERLERSSFTDEVMEDFIVLGIRCINPSSEGRPAMSYVEMELDRIIDKEMNLTTIMGEGTPTVTLGSQLFKAK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi378g00013 381 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 359 IPR047117 -
Sebi378g00013 381 Pfam Protein tyrosine and serine/threonine kinase 82 346 IPR001245 GO:0004672|GO:0006468
Sebi378g00013 381 Gene3D Transferase(Phosphotransferase) domain 1 152 367 - -
Sebi378g00013 381 ProSiteProfiles Protein kinase domain profile. 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi378g00013 381 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Sebi378g00013 381 FunFam Protein kinase superfamily protein 43 150 - -
Sebi378g00013 381 SUPERFAMILY Protein kinase-like (PK-like) 59 347 IPR011009 -
Sebi378g00013 381 FunFam Protein kinase superfamily protein 151 367 - -
Sebi378g00013 381 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi378g00013 Sebi-Chr378 358559 361494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi378g00013 66 381 Trihelix Transcription Factor Family AT5G38560 37.037 2.28e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Sebi378g00013 PK_Tyr_Ser-Thr 2.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi378g00013 - - gmx:100305436 592.808