Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi378g00007 ATGTCTGGCATGCTTCCAGGATTTATGAGAGAAAGCTGTCCTGAGAGTAACAACCTTGCTGCACTAGACCCTGCATTCCCAGAGTTGGGAGGTTTTAATGATGCATACTTTAGTAATCCTGTTTTGAGATTCCAAAAGAATGCTCTCATTGGATCAGGTTTTGGAGAGACTATTGTTGTTAGACACGATTTCAGTTGGAACAGTTTTGTGGGATCCTTACCTTTGTTCTCTCTTGGAGATAATCTTTTTACTGCTGGTCGTAATGTTTCCTACATGCTGTCTCTCAATAATAATAAGTTCAATGGAACTCTGCCTTATCAGCTAGTTTCTAATTGCAGTGACCTCAAGACTTATTTTGAAGCAGCATACAACCAGATTGATGGGTCAATTGGACCTGGAATAGGTGACTCGACGATGCTTCAACGTCTTGATTTAAGTGGGAACAAACTATCTGGAGCACTGCCTAATCAGTTGGGAAACCTAAAAAACATGAAATGGATGCTTCTAGGAGGAAACAATCTAACAGGAGAAGTTCCTTCCCAACTTGGTCAATTGACTTCCCTCACTGTCTTGAATCTGTCTCACAATGCCCTAATAGGACCAATTCCAGCAAGTTTGTCAAATGCCGCAAGTCTTGAAATTCTGTTGCTAGATCACAACAACTTTTCTGGGGAGATACCTTTATCTTTTTCTGCTCTTTCCAATCTTGTTCAACTAGATGTTTCTTTCAACAATCTTTCTGGTCATATTCCACATCTTCAACACCCAAGTGATTGTGATTCCTACAAGGGAATGAACACTTGCACTCTTGCCCTGATCCATACTCCAACTCATCTGCTTCTCTTCCAGTCCCTCTTGAAGTCCATAATTTCCATAGACAGAGGAAAAAGGAGTAAATTTTGTCGCCTTAGCAGTATTAGAAGGCGACAGGTAGTGACCTTTCAAGATGTTCCAATGGAATTGAGTTATGACAGTGTGGTCACAGCTACCGGAAATTTCAGTATCCGGTATCTTATTGGCACAGGTGGCTTTGGGTCAACCTACAAGGCTGAACTGTCCCCAGGTTTTCTTGTTGCCATAAAGAGGCTGTCAATAGGTAGATTTCAAGGCATTCAACAGTTTGAAACAGAAATAAGGACATTGGGGAGAATTCGACACAAGAACCTCGTGACTCTTATTGGCTATTATGTAGGAAAGGTTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGAAACCTTGAAGCTTTCATACACGACAACTCAGGGAAAAATGTACGGTGGCCAGTTATTTACAAAATAGCAAAAGACATAGCAGAGGCCCTTGCTTACCTTCATTACTCTTGTGTTCCTCGCATAGTGCACCGGGATATCAAGCCTAGCAACATTTTACTTGATGAAGATCTTAATGCCTACTTGTCTGATTTTGGCTTGGCACGACTCCTTGAGGTATCTGAGACCCATGCCACTACTGATGTGGCAGGCACATTTGGTTATGTAGCACCTGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCAGATGTTTACAGCTTTGGTGTAGTGTTATTAGAATTGATGTCTGGAAGAAAGTCACTTGATCCATCATTTTCTGAATATGGAAATGGATTCAATATTGTGCCATGGGCTGAGATGCTAATGAATGAAGGTCGTTGTTCTGAGCTATTTTCATCTGCTTTGTGGGAAGCAGGGCCTAAGGAAAAGTTGTTGGGGCTTTTAAAGATTGCATTAACATGCACAGTGGAGACTCTTTCTATTCGGCCGTCAATGAAACAGGTTCTTGAGAAATTGAAACAATTGAAAAATTGA 1830 0.4115 MSGMLPGFMRESCPESNNLAALDPAFPELGGFNDAYFSNPVLRFQKNALIGSGFGETIVVRHDFSWNSFVGSLPLFSLGDNLFTAGRNVSYMLSLNNNKFNGTLPYQLVSNCSDLKTYFEAAYNQIDGSIGPGIGDSTMLQRLDLSGNKLSGALPNQLGNLKNMKWMLLGGNNLTGEVPSQLGQLTSLTVLNLSHNALIGPIPASLSNAASLEILLLDHNNFSGEIPLSFSALSNLVQLDVSFNNLSGHIPHLQHPSDCDSYKGMNTCTLALIHTPTHLLLFQSLLKSIISIDRGKRSKFCRLSSIRRRQVVTFQDVPMELSYDSVVTATGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKVEMFLIYNYLSGGNLEAFIHDNSGKNVRWPVIYKIAKDIAEALAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAEMLMNEGRCSELFSSALWEAGPKEKLLGLLKIALTCTVETLSIRPSMKQVLEKLKQLKN 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi378g00007 609 PRINTS Leucine-rich repeat signature 185 198 - -
Sebi378g00007 609 PRINTS Leucine-rich repeat signature 140 153 - -
Sebi378g00007 609 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 61 606 - -
Sebi378g00007 609 SUPERFAMILY L domain-like 90 253 - -
Sebi378g00007 609 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Sebi378g00007 609 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 409 609 - -
Sebi378g00007 609 CDD STKc_IRAK 339 607 - -
Sebi378g00007 609 Pfam Leucine rich repeat 140 198 IPR001611 GO:0005515
Sebi378g00007 609 SMART serkin_6 333 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi378g00007 609 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 297 408 - -
Sebi378g00007 609 FunFam Leucine-rich repeat receptor protein kinase EMS1 80 180 - -
Sebi378g00007 609 Pfam Protein kinase domain 338 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi378g00007 609 Gene3D Phosphorylase Kinase; domain 1 295 408 - -
Sebi378g00007 609 SUPERFAMILY Protein kinase-like (PK-like) 311 604 IPR011009 -
Sebi378g00007 609 Gene3D Transferase(Phosphotransferase) domain 1 409 609 - -
Sebi378g00007 609 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 260 - -
Sebi378g00007 609 Gene3D Ribonuclease Inhibitor 2 280 IPR032675 -
Sebi378g00007 609 ProSiteProfiles Protein kinase domain profile. 333 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi378g00007 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi378g00007 Sebi-Chr378 227603 229595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi378g00007 1 608 Receptor kinase-like Gene Family AT3G02130 43.169 1.67e-168 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Sebi378g00007 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi378g00007 - - cam:101512699 951.429