Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi377g00010 ATGGAGGAGGAGGGTAAAAAAACCAAAGTAAAACAAAAGATAGAGATTGAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCGCAAAGCGAAAGTATGGCATTCATAAGAAGGCTTGTGAGTTATCAACACTTTGTGGGGATGGGGTTGATATATTCATGTTTTCTCCATGTGGAAGATCATTCTGTTATGGGGATCCTTCTCTGCGATTGTTGACAAGGACAATTGTAGATGCTGAGCACCCTTTAGAAGGTGTCAACTGTAATCAACTTGTAGAGGATCACAAGAGATCAGAGATCGACGAACTCAACAAAAAACATAATGCACTTCAAGATCAATTTCATGGTGAGAAAGCACGTGAGAAAAAACTAAAGGACATATTGAAGCAGAGGAAAAATGATGGCTGGTGGGAGGTCAAAGTGCAAGCTCTTAGTTGTGAACATAATGAGAAAATAGAAGCAAGTCTTTTAGAATTACATGAAAAATTGTCAAATGAACTTTCAATCAAGTGTGGAGGAAATGCTTCTCATGGAGAAGACTCATTTGTTGTTGTCTCTCCTCCAAACCAAGGAGATGATCCATTTCTACACAACACAAGTAATGAGAATACCTTCTCCCCATCAAATCAACACTAA 639 0.3787 MEEEGKKTKVKQKIEIEKIDKANDLSSTFAKRKYGIHKKACELSTLCGDGVDIFMFSPCGRSFCYGDPSLRLLTRTIVDAEHPLEGVNCNQLVEDHKRSEIDELNKKHNALQDQFHGEKAREKKLKDILKQRKNDGWWEVKVQALSCEHNEKIEASLLELHEKLSNELSIKCGGNASHGEDSFVVVSPPNQGDDPFLHNTSNENTFSPSNQH 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi377g00010 212 PANTHER MADS BOX PROTEIN 11 164 - -
Sebi377g00010 212 Coils Coil 94 121 - -
Sebi377g00010 212 Gene3D - 22 95 IPR036879 GO:0003677|GO:0046983
Sebi377g00010 212 SUPERFAMILY SRF-like 11 86 IPR036879 GO:0003677|GO:0046983
Sebi377g00010 212 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Sebi377g00010 212 MobiDBLite consensus disorder prediction 193 212 - -
Sebi377g00010 212 CDD MADS 11 63 - -
Sebi377g00010 212 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Sebi377g00010 212 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Sebi377g00010 212 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Sebi377g00010 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 63 IPR002100 GO:0003677|GO:0046983
Sebi377g00010 212 MobiDBLite consensus disorder prediction 181 212 - -
Sebi377g00010 212 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi377g00010 Sebi-Chr377 228658 229500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi377g00010 6 169 Type I MADS-box Gene Family AT5G60440 35.542 2.12e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi377g00010 SRF-TF 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi377g00010 - K12412 gmx:102665718 167.548