Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi377g00004 ATGGAGGAGGAGGGTAAAAAAACCAAAGGAAAACAAAAGATAGAGATTAAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCGCAAAGCGAAAATATGGCGTTCACAAGAAGGCTTGTGAGTTATCAACACTTACCGGGGCTCGGGTTGATATACTCATGTTTTCTCCATGTGGAAGATCATTCTCTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTTCAGACGATGAGCACCCTTTAGAAGGTGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGAAGATCGATGAACTCAACAAAAAACATGATGCACTTCAAGATCAAGTGTATGTTGAGAAAGCACGTGAGAAAGAACTAAAGGACATATTGAAGACAAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTGCAAGGTCATAGTTGTGAACATGCTGAGGAAATGGAAGCAAGTCTTTTAGAATTACATGAAAATTTGTCAAATGAACCTTCAATCAAGTGTGGAGGAAATTCTTCTCATGCTCCCAAAAATCAATTGAGCGAAAATTATTCAAATTTTACTCATGCTTTTGAAAACAATAATTTATTTGAATCTATCCGTGGAGAAGACTCATTTGTTGTTGTCTCTTCTCCAAGCAAAAAAGCTCATGGAGCCAATGAAAGTCATCGACAAGGAGATGATCTTGATTTATCCCCTTCTAATCAATGCCAAGGAGATGATCCATTTCTACACAACACAAGTAATGAGAATGCTGATAACAGTGACAATCATGCTATTATTACCTTCTCCCCATCAAATCAACACTAA 822 0.3796 MEEEGKKTKGKQKIEIKKIDKANDLSSTFAKRKYGVHKKACELSTLTGARVDILMFSPCGRSFSYGDPSLRLLTRTISDDEHPLEGVNYDQLVEDHKRSKIDELNKKHDALQDQVYVEKAREKELKDILKTRKNDGWWEAKVQGHSCEHAEEMEASLLELHENLSNEPSIKCGGNSSHAPKNQLSENYSNFTHAFENNNLFESIRGEDSFVVVSSPSKKAHGANESHRQGDDLDLSPSNQCQGDDPFLHNTSNENADNSDNHAIITFSPSNQH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi377g00004 273 Gene3D - 22 83 IPR036879 GO:0003677|GO:0046983
Sebi377g00004 273 MobiDBLite consensus disorder prediction 233 273 - -
Sebi377g00004 273 Coils Coil 147 167 - -
Sebi377g00004 273 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Sebi377g00004 273 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Sebi377g00004 273 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Sebi377g00004 273 CDD MADS 10 66 - -
Sebi377g00004 273 PANTHER MADS BOX PROTEIN 11 166 - -
Sebi377g00004 273 Coils Coil 94 114 - -
Sebi377g00004 273 MobiDBLite consensus disorder prediction 215 273 - -
Sebi377g00004 273 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Sebi377g00004 273 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Sebi377g00004 273 SUPERFAMILY SRF-like 10 71 IPR036879 GO:0003677|GO:0046983
Sebi377g00004 273 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi377g00004 Sebi-Chr377 76657 77689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi377g00004 6 179 Type I MADS-box Gene Family AT5G60440 34.595 4.24e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi377g00004 SRF-TF 5.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi377g00004 - K12412 gsj:114420861 171.785